View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9582_low_10 (Length: 348)

Name: NF9582_low_10
Description: NF9582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9582_low_10
NF9582_low_10
[»] chr6 (11 HSPs)
chr6 (1-147)||(29112364-29112510)
chr6 (1-147)||(29077392-29077538)
chr6 (1-147)||(4641419-4641565)
chr6 (217-343)||(29112580-29112706)
chr6 (1-147)||(2968203-2968349)
chr6 (217-343)||(29077608-29077734)
chr6 (218-343)||(4641636-4641761)
chr6 (217-342)||(2968405-2968530)
chr6 (16-147)||(3018346-3018477)
chr6 (257-333)||(30641063-30641137)
chr6 (12-138)||(14338398-14338524)
[»] chr4 (21 HSPs)
chr4 (1-147)||(10762645-10762791)
chr4 (1-147)||(10372620-10372766)
chr4 (1-147)||(44794674-44794820)
chr4 (217-343)||(10762861-10762987)
chr4 (1-147)||(47941875-47942021)
chr4 (217-343)||(10372394-10372520)
chr4 (217-342)||(44794479-44794604)
chr4 (2-146)||(35996128-35996272)
chr4 (217-330)||(2350242-2350355)
chr4 (217-333)||(35996343-35996459)
chr4 (20-146)||(2827487-2827613)
chr4 (1-146)||(2350419-2350567)
chr4 (239-333)||(4519670-4519764)
chr4 (16-146)||(27624885-27625015)
chr4 (16-146)||(44558408-44558538)
chr4 (240-333)||(51041661-51041755)
chr4 (218-333)||(44558220-44558335)
chr4 (217-333)||(27625070-27625186)
chr4 (20-146)||(4519459-4519585)
chr4 (20-146)||(51041846-51041971)
chr4 (217-333)||(2827683-2827794)
[»] chr3 (30 HSPs)
chr3 (1-147)||(41020917-41021063)
chr3 (217-343)||(41020721-41020847)
chr3 (217-333)||(24382619-24382735)
chr3 (18-146)||(45257135-45257263)
chr3 (16-146)||(18430186-18430316)
chr3 (16-146)||(23888687-23888817)
chr3 (1-146)||(33852585-33852730)
chr3 (16-146)||(31887367-31887497)
chr3 (242-333)||(33852409-33852500)
chr3 (20-146)||(1845867-1845993)
chr3 (16-146)||(33113096-33113225)
chr3 (239-333)||(48634183-48634277)
chr3 (1-146)||(23774216-23774360)
chr3 (16-146)||(48633956-48634090)
chr3 (217-333)||(18430005-18430121)
chr3 (245-333)||(23774455-23774543)
chr3 (23-146)||(24382808-24382931)
chr3 (242-333)||(45256953-45257043)
chr3 (217-333)||(2977058-2977174)
chr3 (239-333)||(33112914-33113008)
chr3 (217-333)||(45898111-45898222)
chr3 (16-146)||(2977244-2977374)
chr3 (260-333)||(23888507-23888580)
chr3 (22-77)||(39641823-39641878)
chr3 (1-118)||(40508854-40508971)
chr3 (283-333)||(54093034-54093084)
chr3 (20-81)||(45898328-45898389)
chr3 (16-56)||(27899106-27899146)
chr3 (239-311)||(31887202-31887274)
chr3 (114-146)||(45898292-45898324)
[»] chr1 (23 HSPs)
chr1 (1-147)||(47269370-47269516)
chr1 (1-147)||(27940672-27940818)
chr1 (217-331)||(47269186-47269300)
chr1 (218-314)||(27940889-27940985)
chr1 (16-147)||(36895424-36895555)
chr1 (20-147)||(46638721-46638848)
chr1 (16-146)||(42134561-42134691)
chr1 (20-146)||(45380899-45381025)
chr1 (22-147)||(31801718-31801843)
chr1 (16-141)||(44157512-44157637)
chr1 (20-146)||(35479891-35480016)
chr1 (16-146)||(6575271-6575399)
chr1 (246-333)||(18183678-18183765)
chr1 (239-333)||(45380711-45380805)
chr1 (240-333)||(42134782-42134875)
chr1 (219-333)||(6575448-6575562)
chr1 (16-146)||(18183859-18183988)
chr1 (63-146)||(33685164-33685247)
chr1 (242-333)||(44158088-44158179)
chr1 (239-333)||(35479700-35479794)
chr1 (260-333)||(46638541-46638614)
chr1 (16-138)||(6818601-6818723)
chr1 (260-333)||(31801950-31802023)
[»] chr7 (25 HSPs)
chr7 (1-147)||(8423195-8423341)
chr7 (1-147)||(35344204-35344350)
chr7 (217-342)||(8423000-8423125)
chr7 (217-342)||(35344009-35344134)
chr7 (19-147)||(46996616-46996744)
chr7 (1-146)||(46812497-46812642)
chr7 (20-140)||(23953888-23954008)
chr7 (217-332)||(40784626-40784741)
chr7 (217-333)||(33038534-33038650)
chr7 (217-333)||(46812311-46812427)
chr7 (217-333)||(47341418-47341534)
chr7 (16-146)||(2167558-2167688)
chr7 (217-331)||(2167753-2167867)
chr7 (244-333)||(38613771-38613860)
chr7 (16-146)||(47341597-47341731)
chr7 (217-333)||(23954085-23954201)
chr7 (19-146)||(27955452-27955579)
chr7 (20-146)||(2492410-2492535)
chr7 (16-146)||(33038712-33038842)
chr7 (255-333)||(27955687-27955764)
chr7 (20-146)||(40784429-40784555)
chr7 (260-333)||(46996436-46996512)
chr7 (16-81)||(38614892-38614956)
chr7 (16-50)||(38613492-38613526)
chr7 (244-333)||(23168392-23168481)
[»] scaffold0477 (1 HSPs)
scaffold0477 (1-147)||(6548-6694)
[»] chr2 (23 HSPs)
chr2 (2-147)||(15372564-15372709)
chr2 (1-147)||(41706603-41706749)
chr2 (218-342)||(15372780-15372904)
chr2 (217-343)||(39803-39929)
chr2 (16-146)||(39312-39442)
chr2 (20-146)||(92262-92388)
chr2 (217-342)||(41706819-41706935)
chr2 (16-146)||(37417352-37417482)
chr2 (1-146)||(29909575-29909720)
chr2 (20-141)||(42879438-42879559)
chr2 (239-333)||(15432627-15432721)
chr2 (244-333)||(37417585-37417674)
chr2 (221-326)||(42001893-42001998)
chr2 (217-323)||(25619943-25620049)
chr2 (1-146)||(15432392-15432537)
chr2 (1-90)||(39620-39709)
chr2 (260-333)||(29909396-29909469)
chr2 (217-340)||(39125-39243)
chr2 (16-146)||(25619739-25619869)
chr2 (239-333)||(42879617-42879712)
chr2 (1-146)||(42001674-42001818)
chr2 (266-333)||(92081-92148)
chr2 (18-56)||(11315340-11315378)
[»] chr8 (20 HSPs)
chr8 (1-147)||(31201057-31201203)
chr8 (217-333)||(8654780-8654893)
chr8 (7-146)||(38882712-38882851)
chr8 (16-146)||(1320696-1320826)
chr8 (20-146)||(42897689-42897815)
chr8 (217-342)||(31200871-31200987)
chr8 (20-146)||(8654582-8654708)
chr8 (16-147)||(33750298-33750429)
chr8 (16-146)||(32822440-32822569)
chr8 (217-333)||(42897501-42897617)
chr8 (242-333)||(37525755-37525846)
chr8 (253-333)||(38882523-38882603)
chr8 (217-320)||(462111-462214)
chr8 (16-146)||(37525938-37526068)
chr8 (20-131)||(462300-462411)
chr8 (260-333)||(33750118-33750191)
chr8 (217-333)||(32822641-32822757)
chr8 (16-146)||(31821497-31821618)
chr8 (244-333)||(9184695-9184784)
chr8 (260-333)||(31821725-31821798)
[»] chr5 (19 HSPs)
chr5 (16-146)||(18728517-18728647)
chr5 (16-146)||(32087593-32087723)
chr5 (1-146)||(35395397-35395540)
chr5 (20-146)||(33256483-33256609)
chr5 (16-146)||(43317975-43318105)
chr5 (19-146)||(38178008-38178135)
chr5 (19-146)||(38205232-38205359)
chr5 (16-146)||(38597024-38597154)
chr5 (217-333)||(35292115-35292231)
chr5 (16-146)||(35292297-35292427)
chr5 (217-333)||(32838236-32838352)
chr5 (217-333)||(38177820-38177936)
chr5 (217-333)||(38205044-38205160)
chr5 (217-333)||(35395609-35395720)
chr5 (218-333)||(18728336-18728446)
chr5 (260-333)||(32087831-32087904)
chr5 (264-333)||(43317801-43317870)
chr5 (19-141)||(32838420-32838545)
chr5 (260-333)||(33256716-33256789)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 29112364 - 29112510
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  29112364 gaaatttcaatttcatccctgaatttgtcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctggcatgctg 29112463  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29112464 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 29112510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 29077392 - 29077538
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29077392 gaaatttcaatttcatccctgaatttgtcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctg 29077491  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    || |||| |||||||||||||||||||||||||||||||||||||||    
T  29077492 tgttgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 29077538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 4641419 - 4641565
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  4641419 gaaatatcaatttaatccctgaatttatcagacctccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtttccttgcatgctg 4641518  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  4641519 tgctgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 4641565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 29112580 - 29112706
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29112580 gcccctgcattacatattccttcttcttcacattttacttagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcac 29112679  T
Q  317 ccctccaaaatcatcatgatgtccatc 343  Q
    ||||||||||||||||| || ||||||    
T  29112680 ccctccaaaatcatcatcatctccatc 29112706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2968203 - 2968349
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||    
T  2968203 gaaatatcaatttaatccctgaatttatcagacgtccatcaaaaaggtccatccgttaacgggctccgttagccgtgctgacatgtcgccttgcatgttg 2968302  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  2968303 tgctgtcttgtacgcgtggcaagaaggaagccacgtgttcagagacg 2968349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 29077608 - 29077734
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29077608 gcccctgcattacatatttcttcttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcac 29077707  T
Q  317 ccctccaaaatcatcatgatgtccatc 343  Q
    ||||||||||||||||| || ||||||    
T  29077708 ccctccaaaatcatcatcatctccatc 29077734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 4641636 - 4641761
Alignment:
Q  218 cccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacc 317  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||    
T  4641636 cccctgcattacatattcctccttcttcacattttactcagaaacatcaaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcgcc 4641735  T
Q  318 cctccaaaatcatcatgatgtccatc 343  Q
    |||||||||||||||| || ||||||    
T  4641736 cctccaaaatcatcatcatctccatc 4641761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 2968405 - 2968530
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2968405 gcccctgcattacatattcatccttcttcacattttactcagaaaaatcaaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcac 2968504  T
Q  317 ccctccaaaatcatcatgatgtccat 342  Q
    ||||||||||||||||| || |||||    
T  2968505 ccctccaaaatcatcatcatctccat 2968530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 3018477 - 3018346
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| |||||||||||||| |  | | ||||||||||||||| |||  | ||| ||| |||| |||| |||| |||||||    
T  3018477 tccctgaatttgtcagacgtccatcaaaaaggtccctccatccaagtgctccgttagccatgttgatctatcgtcttgcatgatgtgttgtcttgtacgc 3018378  T
Q  116 gtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||||| ||||||||| ||||||||||||    
T  3018377 gtggcaagacggaagccacatgttcagggacg 3018346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 30641137 - 30641063
Alignment:
Q  257 agaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||||||||| |||||| | |||||||||||| |||||||  | ||| || || ||||||||||||||||||    
T  30641137 agaaacatcaaaaacgtccttgacccttctccttcccactaaaac--tttccgttctcgcccctccaaaatcatcat 30641063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 14338524 - 14338398
Alignment:
Q  12 ttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgt 111  Q
    |||||||||||||||  ||||||||||| |||| |||||||||||| |   |||||||||   ||| |||  | ||   || |||| |||| ||||||||    
T  14338524 ttcatccctgaatttcacagacgtccatcaaaatggtccctccgttcaaaagctccgttactgatgatgatgtatcctgttgcatgatgtgttgtcctgt 14338425  T
Q  112 acgcgtggcaagaaggaagccacgtgt 138  Q
    || |||| ||| |||||||||||||||    
T  14338424 acacgtgtcaacaaggaagccacgtgt 14338398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 10762645 - 10762791
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  10762645 gaaatttcaatttcatccctgaatttgtcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctggcatgctg 10762744  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10762745 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 10762791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 10372766 - 10372620
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  10372766 gaaatatcaatttcatccctgaatttgtcagacgtccatcaaaaaggtccctccgttaacggactccgttagccatgctgacatgtcgccttgcatgctg 10372667  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  10372666 tgctgtcttgtacgcgtggcaagaaagaagccacgtgttcagggacg 10372620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 44794820 - 44794674
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44794820 gaaatatcaatttaatccctgaatttatcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctg 44794721  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    || |||| |||||||||||||||||||||||||||||||||||||||    
T  44794720 tgatgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 44794674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 10762861 - 10762987
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10762861 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcac 10762960  T
Q  317 ccctccaaaatcatcatgatgtccatc 343  Q
    ||||||||||||||||| || ||||||    
T  10762961 ccctccaaaatcatcatcatctccatc 10762987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 47941875 - 47942021
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  47941875 gaaatatcaatttaatccctgaatttatcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgttg 47941974  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  47941975 tgctgtcttgtacgcgtggcaagaaggaagccacgtgttcaaggacg 47942021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 10372520 - 10372394
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  10372520 gcccctgcattacatattcctccttcttcacattttacttagaaacatcaaaaacatccttgactcttctccttcccgctaaaacattctccattgtcac 10372421  T
Q  317 ccctccaaaatcatcatgatgtccatc 343  Q
    ||||||||||||||||| || ||||||    
T  10372420 ccctccaaaatcatcatcatctccatc 10372394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 44794604 - 44794479
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  44794604 gcccctgcattacatattcctccttcttcacattttactcagaaacattaaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcac 44794505  T
Q  317 ccctccaaaatcatcatgatgtccat 342  Q
    ||||||||||||||||| || |||||    
T  44794504 ccctccaaaatcatcataatctccat 44794479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 35996128 - 35996272
Alignment:
Q  2 aaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgt 101  Q
    |||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||  | | |||||||||||||||||||||||||||| | |||| |||    
T  35996128 aaatatcaatttaatccctgaatttatcagacgtccatcaaaaaggtccctccgtccaagtgctccgttagccatgctgacatgtcgccatgcatgttgt 35996227  T
Q  102 gctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    | |||| ||||| ||||||||||||||||||||||||||| ||||    
T  35996228 gttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggac 35996272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 2350355 - 2350242
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||    
T  2350355 gcccctgcattacatattcctccttcttcacatttcagttagaaacatcaaaaacatccttgactcttctccttcccactaaaactttctccattctcac 2350256  T
Q  317 ccctccaaaatcat 330  Q
    ||||||||||||||    
T  2350255 ccctccaaaatcat 2350242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 35996343 - 35996459
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||  ||| |||||||||||||||||||||| ||||||| | ||||    
T  35996343 gcccctgcattacatattcctccttcttcacatttcagtcagaaacatcaaaaacatatttgactcttctccttcccgctaaaactttctccagtctcac 35996442  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  35996443 ccctccaaaatcatcat 35996459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 2827487 - 2827613
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||||||| ||||||||||||||||  | |  ||||||||||| ||||||  ||||| ||| |||| |||| |||| |||||||||||    
T  2827487 tgaatttgtcagacgtccatcaaaaaggtccctccgtccaagtcctccgttagccttgctgatctgtcgtcttgcatgatgtgttgtcttgtacgcgtgg 2827586  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||||    
T  2827587 caagaaggaagccacgtgttcagggac 2827613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2350567 - 2350419
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| ||| |||||||| |||||||| ||| ||||||||||||| ||  | | |||||||||||||||||||||||||||  | |||||||    
T  2350567 gaaatatcaatttaatctctgaatttatcagacgttcatcaaaaaggtccctctgtccaagtgctccgttagccatgctgacatgtcgctctgcatgctg 2350468  T
Q  101 tgctg---tcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || ||   || ||||| ||||||||||||||||||||||||||| ||||    
T  2350467 tgttgtactcttgtacacgtggcaagaaggaagccacgtgttcaaggac 2350419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 4519670 - 4519764
Alignment:
Q  239 cttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||| |||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  4519670 cttcctcacatttcactcagaaacatcaaaaacatccttgacccttcttcttcccgctaaaactttctccattctcacctctccaaaatcatcat 4519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 27624885 - 27625015
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| |||||||||  ||||| || | |||| |||||||||| |||  ||||||| | |||||| || |||| ||||||     
T  27624885 tccctgaatttgtcagacgtccatcaaaaaggtcattccgtcaaagtgctctgttagccatgttgatctgtcgccatgcatgctttgttgtcttgtacgt 27624984  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||| ||||    
T  27624985 gtggcaagaaggaagccacgtgttcaaggac 27625015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 44558538 - 44558408
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| |||||||||| |||||  | | |||  ||||||||||||||  |||| || | |||||| || |||| |||||||    
T  44558538 tccctgaatttgtcagacgtccatcaaaaaggtccttccgtccaagtgctatgttagccatgctgatctgtcaccatgcatgctctgttgtcttgtacgc 44558439  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||| ||||    
T  44558438 gtggcaagaaggaagccacgtgttcaaggac 44558408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 51041755 - 51041661
Alignment:
Q  240 ttcttcacattttactcagaaacatcaaaaacatccttggctcttctcctt-cccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| ||||||||||||||||||| || ||| | ||||||||| ||||||||| | ||||||||| |||||||||||||||||||||    
T  51041755 ttcttcacatttcactcagaaacatcaaaaacgtcattgacccttctccttccccgctaaagctttctccattctcacccctccaaaatcatcat 51041661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 44558335 - 44558220
Alignment:
Q  218 cccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacc 317  Q
    ||||||||||||  || ||| |||||| |||||| | ||||||| ||||||||| |||||| | |||||||||||| |||||||  | |||||| |||||    
T  44558335 cccctgcattacccatacctccttctttacatttcagtcagaaaaatcaaaaacgtccttgacccttctccttcccactaaaactctatccattctcacc 44558236  T
Q  318 cctccaaaatcatcat 333  Q
    ||||||||||||||||    
T  44558235 cctccaaaatcatcat 44558220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 27625070 - 27625186
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| |||||||| |||| | ||||||| || |||||| || ||| | |||||||||||| ||||||| || |||||| ||||    
T  27625070 gcccctgcattacccatacctccttcttcagatttcagtcagaaaaataaaaaacgtcattgacccttctccttcccactaaaactttatccattctcac 27625169  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  27625170 ccctccaaaatcatcat 27625186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 4519459 - 4519585
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    ||||||||| |||| | ||| ||||||||||||||||  |   |||||||||||||||||||  ||||||| | ||||||||| |||| ||||| |||||    
T  4519459 tgaatttgttagacattcatcaaaaaggtccctccgtccaaatgctccgttagccatgctgatctgtcgccctgcatgctgtgttgtcttgtacacgtgg 4519558  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    ||| ||| ||| |||||||||| ||||    
T  4519559 caaaaagaaagtcacgtgttcaaggac 4519585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 51041971 - 51041846
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    ||||||||||||||||| || |||||||||||||| |  | | |||  ||||||||||||||  ||||||| | |||| |||| |||| | ||| |||||    
T  51041971 tgaatttgtcagacgtc-atcaaaaaggtccctccatccaagtgctttgttagccatgctgatctgtcgccctgcatgttgtgttgtcttatacacgtgg 51041873  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    ||||||||||||||| |||||| ||||    
T  51041872 caagaaggaagccacatgttcaaggac 51041846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 2827683 - 2827794
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||| |||||||    |||||| ||||||||| |||||| | ||||| |||| ||||||||| | ||||||| ||||    
T  2827683 gcccctgcattacccatacctccttctccacattt----cagaaa-atcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccattttcac 2827777  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  2827778 ccctccaaaatcatcat 2827794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 41021063 - 41020917
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  41021063 gaaatttcaatttcatccctgaatttgtcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctggcatgctg 41020964  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41020963 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 41020917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 41020847 - 41020721
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41020847 gcccctgcattacatatttcttcttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcac 41020748  T
Q  317 ccctccaaaatcatcatgatgtccatc 343  Q
    ||||||||||||||||| || ||||||    
T  41020747 ccctccaaaatcatcatcatctccatc 41020721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 24382735 - 24382619
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||||||||||| |||||||||||| |||||| || ||| |||||||||||||||||||||| ||||||||| ||||    
T  24382735 gcccctgcattacccatacctccttcttcacatttcactcagaaacataaaaaacgtcattgtctcttctccttcccgctaaaacattctccattttcac 24382636  T
Q  317 ccctccaaaatcatcat 333  Q
    |||| ||||||||||||    
T  24382635 cccttcaaaatcatcat 24382619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 45257263 - 45257135
Alignment:
Q  18 cctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgt 117  Q
    |||||||||||||||||||||||||||| ||||||||||  | | |||||||||| |||||||||||| |||| | |||| |||| |||| ||||| |||    
T  45257263 cctgaatttgtcagacgtccataaaaaatgtccctccgtccaagtgctccgttagtcatgctgacatgccgccctgcatgttgtgttgtcttgtacacgt 45257164  T
Q  118 ggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||| ||||||||||||||| ||||    
T  45257163 ggcaagaatgaagccacgtgttcaaggac 45257135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 18430316 - 18430186
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||| |||||||||||||  ||||||||||||||||  | | ||||||||||||||| |||||||||||| | ||||| ||| |||| ||||| |    
T  18430316 tccctgaatatgtcagacgtccaataaaaaggtccctccgtccaagtgctccgttagccatggtgacatgtcgccctgcatgccgtgttgtcttgtacac 18430217  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||| ||||||||||| ||||    
T  18430216 gtggcaagaaggaaaccacgtgttcaaggac 18430186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 23888817 - 23888687
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||||| |||||||| ||||||||||||||||  |    ||||||||||| ||||||  ||||||||| ||| ||||| |||| |||||||    
T  23888817 tccctgaatttgtcaaacgtccatcaaaaaggtccctccgtccaaatcctccgttagccttgctgatctgtcgccttgcatactgtgttgtcttgtacgc 23888718  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||||||||||||||| |||||||||||    
T  23888717 gtggcaagaaggaagccacatgttcagggac 23888687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33852730 - 33852585
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| ||  |||||||| |||||||||||| ||||||||||||| ||  | | ||||||||||||||| |||||||||||| | |||| ||    
T  33852730 gaaatatcaatttaatttctgaatttatcagacgtccatcaaaaaggtccctctgtccaagtgctccgttagccatggtgacatgtcgccctgcatgttg 33852631  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || |||| ||||  ||||||||||||||||||||||||||| ||||    
T  33852630 tgttgtcttgtagacgtggcaagaaggaagccacgtgttcaaggac 33852585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 31887497 - 31887367
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||||||| ||| || ||||||||||||||||  | | |||||||||||||||||||  ||||||||| ||||||||| |||| ||||| |    
T  31887497 tccctgaatttgtcagatgtctatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatttgtcgccttgcatgctgtgttgtcttgtacac 31887398  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||| ||||||||||  |||||| ||||    
T  31887397 gtggcaaaaaggaagccatatgttcaaggac 31887367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 33852500 - 33852409
Alignment:
Q  242 cttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||| | |||||||||| ||||||||||||| || ||| |||| |||||||||| ||||||||| |||||||||||||||||||||    
T  33852500 cttcacatttcagtcagaaacataaaaaacatccttgacttttcacctttccgctaaaactttctccattctcacccctccaaaatcatcat 33852409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 1845867 - 1845993
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||| ||||||||||| ||||| ||||||||||  | | ||||||||| ||||| ||| |||||||| | |||| |||| |||||| ||| |||||    
T  1845867 tgaatttgacagacgtccatcaaaaacgtccctccgtccaagtgctccgttaaccatgttgatatgtcgccctgcatgatgtgatgtcctatacacgtgg 1845966  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    ||| |||||||||||||||||| ||||    
T  1845967 caaaaaggaagccacgtgttcaaggac 1845993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 33113225 - 33113096
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||| |||||||||||||||||| |||||||||||||||| || | | |||||||||||||| ||  |||||||   |||| || |||||| ||||| |    
T  33113225 tccctaaatttgtcagacgtccatcaaaaaggtccctccgtcaa-gtgatccgttagccatgccgatctgtcgcccagcatgttgcgctgtcttgtacac 33113127  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||| |||||||||||||||||| ||||    
T  33113126 gtggcaaaaaggaagccacgtgttcaaggac 33113096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 48634183 - 48634277
Alignment:
Q  239 cttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||| ||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  48634183 cttcctcacatttctctcaaaaacatcaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccatcat 48634277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 23774216 - 23774360
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| |||||||  |||||||||||||||||||||||| ||||| |||||||   ||| | |||| |||||||||| |||  ||||||| | |||| ||    
T  23774216 gaaatatcaatttagtccctgaatttgtcagacgtccatcaaaaaagtccctcgtctaa-gtgctctgttagccatgttgatctgtcgccctgcatgatg 23774314  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || |||| ||||| |||||||| |||||||||||||||||| ||||    
T  23774315 tgttgtcttgtacacgtggcaataaggaagccacgtgttcaaggac 23774360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 48633956 - 48634090
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtg----ctgtcctgt 111  Q
    |||||||||||||||||||||||| ||||||||||||||||  | | ||||||||||||||| |||  ||||||| | |||| ||||     |||| |||    
T  48633956 tccctgaatttgtcagacgtccatcaaaaaggtccctccgtccaagtgctccgttagccatgttgatctgtcgccctgcatgatgtgttgtttgtcttgt 48634055  T
Q  112 acgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || |||||||| |||||||||||||||||| ||||    
T  48634056 acacgtggcaaaaaggaagccacgtgttcaaggac 48634090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 18430121 - 18430005
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || |||  |||||||||||| | |||||| ||||||||||||||||| |  ||| | || |||||||||| ||||||||| ||||    
T  18430121 gcccctgcattacccatacctcattcttcacatttcagtcagaagcatcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcac 18430022  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  18430021 ccctccaaaatcatcat 18430005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 23774455 - 23774543
Alignment:
Q  245 cacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||  ||||||||||| |||||| |||||| |||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  23774455 cacatttctctcagaaacataaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccatcat 23774543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 24382931 - 24382808
Alignment:
Q  23 atttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtggcaa 122  Q
    ||||||||||||||||| ||||||||||||||||  | |   ||||||||||||||||| |||||||| | |||| |||| |||| | ||  || |||||    
T  24382931 atttgtcagacgtccatcaaaaaggtccctccgtccaagtcatccgttagccatgctgatatgtcgccctgcatgttgtgttgtcttatatacggggcaa 24382832  T
Q  123 gaaggaagccacgtgttcagggac 146  Q
     |||||||||||||||||| ||||    
T  24382831 aaaggaagccacgtgttcaaggac 24382808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 45257043 - 45256953
Alignment:
Q  242 cttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| ||| |||||||||||||||||||| |  ||  |||| |||||||||| ||||||||| |||||||||||||||||||||    
T  45257043 cttcacattttagtca-aaacatcaaaaacatccttgaccttttacctttccgctaaaactttctccattctcacccctccaaaatcatcat 45256953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 2977174 - 2977058
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||| |||||  || ||| |||| |||||||| ||||||||||||||||||  | | || | ||||| |||||||| ||||| ||||||||| ||||    
T  2977174 gcccctgtattactcatacctccttcctcacatttcactcagaaacatcaaaaatgttcgtgacccttcttcttcccgcaaaaaccttctccattctcac 2977075  T
Q  317 ccctccaaaatcatcat 333  Q
    | |||||||||||||||    
T  2977074 ctctccaaaatcatcat 2977058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 33113008 - 33112914
Alignment:
Q  239 cttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||| |||||||| ||||| |||||| |||||| ||  || | |||||| ||||||||||||| ||||||||| ||||| |||||||||||||||    
T  33113008 cttcctcacatttcactcataaacataaaaaacgtctctgacccttctcattcccgctaaaactttctccattctcacctctccaaaatcatcat 33112914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 45898222 - 45898111
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||||||||||    |||| |||||||||||| |||||| | ||||| |||| ||||||||| | ||||||| ||||    
T  45898222 gcccctgcattacccatacctccttcttcacatt----tcag-aacatcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccattttcac 45898128  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||| ||||||    
T  45898127 ccctccaaaaacatcat 45898111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 2977374 - 2977244
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||| ||||||||| |||||||| |||||||||| ||||   | | ||||||||||| |||||||  ||||||| | |||||| || ||||   ||| |    
T  2977374 tccctaaatttgtcatacgtccatcaaaaaggtccatccgcccaagtgctccgttagcgatgctgatttgtcgccctgcatgctatgttgtctaatacac 2977275  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||| |||| |||||| ||||    
T  2977274 gtggcaagaaggaaaccacatgttcaaggac 2977244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 23888580 - 23888507
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||||||  ||||| | ||||| |||| ||||||||| | ||||||| |||||||||||||||||||||    
T  23888580 aacatcaaaaacgaccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcat 23888507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 39641878 - 39641823
Alignment:
Q  22 aatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatg 77  Q
    |||||||||||||| ||||||||||||||||||||| | |  ||||||||||||||    
T  39641878 aatttgtcagacgttcataaaaaaggtccctccgttcaagtactccgttagccatg 39641823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 40508971 - 40508854
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| |||| || |||| |||||||||||||||||||| ||||| ||||||||||  | | | |||||||| | ||||||  ||||||| | |||| ||    
T  40508971 gaaatatcaacttaatccttgaatttgtcagacgtccatcaaaaatgtccctccgtccaagtgttccgttagtcgtgctgatctgtcgccctgcatgttg 40508872  T
Q  101 tgctgtcctgtacgcgtg 118  Q
    || |||| ||||| ||||    
T  40508871 tgttgtcatgtacacgtg 40508854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 54093034 - 54093084
Alignment:
Q  283 ttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||||||||||||| |||  |||| ||||| |||||||||||||||    
T  54093034 ttctccttcccgctaaaaccttcatcattttcacctctccaaaatcatcat 54093084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 45898389 - 45898328
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctga 81  Q
    ||||||||||||||||| || ||||||||||||||||  | |  ||||||||||| ||||||    
T  45898389 tgaatttgtcagacgtctatcaaaaaggtccctccgtccaagtcctccgttagccttgctga 45898328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 27899146 - 27899106
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgt 56  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  27899146 tccctgaattttacagacgtccataaaaatggtccctccgt 27899106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 31887274 - 31887202
Alignment:
Q  239 cttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccatt 311  Q
    |||| |||||||| ||||| ||| ||||||||| || |||    ||||||||||||||||||| |||||||||    
T  31887274 cttcctcacatttcactcaaaaatatcaaaaacgtcattgaacattctccttcccgctaaaactttctccatt 31887202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 45898324 - 45898292
Alignment:
Q  114 gcgtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||| ||||||    
T  45898324 gcgtggcaagaaggaagccacgtgtttagggac 45898292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 47269516 - 47269370
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||    
T  47269516 gaaatttcaatttcatccctgaatttgtcaaacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgtctggcatggtg 47269417  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47269416 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 47269370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 27940672 - 27940818
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| ||    
T  27940672 gaaatatcaatttaatccttgaatttatcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtaaccttgcatgatg 27940771  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  27940772 tgctgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 27940818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 217 - 331
Target Start/End: Complemental strand, 47269300 - 47269186
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  47269300 gcccctgcattacatattccttcttcttcacattttactcagaaccatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcac 47269201  T
Q  317 ccctccaaaatcatc 331  Q
    |||||||||||||||    
T  47269200 ccctccaaaatcatc 47269186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 218 - 314
Target Start/End: Original strand, 27940889 - 27940985
Alignment:
Q  218 cccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtc 314  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  27940889 cccctgcattacatattcctccttcttcacattttactcagaaacatcaaaaacatcattgactcttctccttcccgctaaaacgttctccattgtc 27940985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 36895555 - 36895424
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| |||||||||||| |||  | | |||||||||||||||||||  ||||| ||| |||| |||| |||| |||||||    
T  36895555 tccctgaatttgtcagacgtccatcaaaaaggtcccttcgtccaagtgctccgttagccatgctgatctgtcgtcttgcatgttgtgttgtcttgtacgc 36895456  T
Q  116 gtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||||||||||||||||||||||||||||    
T  36895455 gtggcaagaaggaagccacgtgttcagggacg 36895424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 46638848 - 46638721
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||||||  ||||||||||||||||  | | |||||||||||||||||||  ||||||||| |||| |||| |||| |||||||||||    
T  46638848 tgaatttgtcagacgtccaccaaaaaggtccctccgtccaagtgctccgttagccatgctgatctgtcgccttgcatgttgtgttgtcttgtacgcgtgg 46638749  T
Q  120 caagaaggaagccacgtgttcagggacg 147  Q
    ||| ||||||||||||||||||||||||    
T  46638748 caaaaaggaagccacgtgttcagggacg 46638721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 42134561 - 42134691
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||  | | ||||||||||||||| ||||||||| || | ||||||||| |||| ||||| |    
T  42134561 tccctgaatttgtcagacgtccatcaaaaaggtccctccgtccaagtgctccgttagccatgttgacatgtcaccctgcatgctgtgttgtcttgtacac 42134660  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||||||||||||||| |||||| ||||    
T  42134661 gtggcaagaaggaagccacatgttcaaggac 42134691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 45381025 - 45380899
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||||||| |||||||| |||||||  | | ||||||||||||||| |||||||||||| | ||||||||| |||| ||||| |||||    
T  45381025 tgaatttgtcagacgtccatcaaaaaggttcctccgtccaagtgctccgttagccatggtgacatgtcgccctgcatgctgtgttgtcttgtacacgtgg 45380926  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||| ||||    
T  45380925 caagaaggaagccacgtgttcaaggac 45380899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 31801718 - 31801843
Alignment:
Q  22 aatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtggca 121  Q
    ||||||| |||||||||| ||||||||||||||||  | | |||||||||||||||||||  ||||| ||| |||| |||| |||| |||||||||||||    
T  31801718 aatttgtgagacgtccatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatttgtcgtcttgcatgttgtgttgtcttgtacgcgtggca 31801817  T
Q  122 agaaggaagccacgtgttcagggacg 147  Q
    ||||||||| ||||||||||||||||    
T  31801818 agaaggaagtcacgtgttcagggacg 31801843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 44157512 - 44157637
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||| |||||||||||||||| |||| |||||  | | ||||||| ||||||  |||||||||||| | |||| |||| |||| ||||| |    
T  44157512 tccctgaatttgttagacgtccataaaaaaagtccttccgtctaagtgctccgtcagccatagtgacatgtcgccctgcatgttgtgttgtcttgtacac 44157611  T
Q  116 gtggcaagaaggaagccacgtgttca 141  Q
    ||||||||||||||||||||||||||    
T  44157612 gtggcaagaaggaagccacgtgttca 44157637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 35480016 - 35479891
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||||||| |||||||||| |||||  | | |||| |||||| |||||||  ||||||| | |||||| || |||| |||||||||||    
T  35480016 tgaatttgtcagacgtccatcaaaaaggtccttccgtccaagtgctctgttagc-atgctgatctgtcgccatgcatgctttgttgtcttgtacgcgtgg 35479918  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    |||||| ||||||||||||||||||||    
T  35479917 caagaaagaagccacgtgttcagggac 35479891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 6575271 - 6575399
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||| || || |||||||||| ||||| || | |||| ||  |||||||||| |||||| | | |||||| || |||| |||||||    
T  6575271 tccctgaatttgtcagacatctatcaaaaaggtccttccgtcaaagtgctctgt--gccatgctgatatgtcgtcatgcatgctttgttgtcttgtacgc 6575368  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||| ||||    
T  6575369 gtggcaagaaggaagccacgtgttcaaggac 6575399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 18183765 - 18183678
Alignment:
Q  246 acattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||| ||||||||||||||||||| || ||| | |||||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  18183765 acatttcactcagaaacatcaaaaacgtcattgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcat 18183678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 45380805 - 45380711
Alignment:
Q  239 cttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||||||| | |||||||||||||||||||||||| |  ||| | || |||||||||| ||||||||| |||||||||||||||||||||    
T  45380805 cttcttcacatttcagtcagaaacatcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcat 45380711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 42134782 - 42134875
Alignment:
Q  240 ttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| | |||||||||||||||||||||||| |  |||  ||| |||||||||| ||||||||| |||||||||||||||||||||    
T  42134782 ttcttcacatttcagtcagaaacatcaaaaacatccttgacctttcatctttccgctaaaactttctccattctcacccctccaaaatcatcat 42134875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 6575448 - 6575562
Alignment:
Q  219 ccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcaccc 318  Q
    |||||||||||  || ||| ||||||||||||| | | ||||| || |||||| |||||| | |||||||||||| ||||||| || |||||| ||||||    
T  6575448 ccctgcattacccatacctccttcttcacatttcagttagaaaaataaaaaacgtccttgacccttctccttcccactaaaactttatccattctcaccc 6575547  T
Q  319 ctccaaaatcatcat 333  Q
    |||||||||||||||    
T  6575548 ctccaaaatcatcat 6575562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 18183988 - 18183859
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| ||||| |||||| | | || | |||||||||||||||||||  ||||| |   |||| |||| |||| ||||| |    
T  18183988 tccctgaatttgtcagacgtccatcaaaaatgtcccttcatcaa-gtgctccgttagccatgctgatttgtcgtccagcatgttgtgttgtcttgtacac 18183890  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||| || ||||||||||||||| ||||    
T  18183889 gtggcaaaaaagaagccacgtgttcaaggac 18183859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 33685247 - 33685164
Alignment:
Q  63 gctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||| ||  ||||||| | |||| || | |||| ||||| ||||||||||||||||||||||||||| ||||    
T  33685247 gctccgttagccatgccgatgtgtcgccctgcatgttgagttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggac 33685164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 333
Target Start/End: Original strand, 44158088 - 44158179
Alignment:
Q  242 cttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||| | |||||||||||||||||||||||| |  ||| |||| |  ||||||| ||||||||| |||||| | ||||||||||||    
T  44158088 cttcacatttcagtcagaaacatcaaaaacatccttgacctttcacctttctactaaaactttctccattctcaccctttcaaaatcatcat 44158179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 35479794 - 35479700
Alignment:
Q  239 cttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||| |||| | ||||||| || |||||| |||||| | |||||||||||| ||||||| || | |||| || || |||||||||||||||    
T  35479794 cttcttcatatttcagtcagaaaaataaaaaacgtccttgacccttctccttcccactaaaactttattcattctcgcctctccaaaatcatcat 35479700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 46638614 - 46638541
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| || ||| | ||||| |||  ||||||||| | ||||||| |||||||||||||||||||||    
T  46638614 aacatcaaaaacgtctttgacccttcttcttttcgctaaaacttcctccattttcacccctccaaaatcatcat 46638541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 6818723 - 6818601
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||  ||||||||||| |||| |||||||||||  |   ||||||||||   || |||||||||  ||| |||| |||| |||| ||||| |    
T  6818723 tccctgaattttacagacgtccatcaaaatggtccctccgtccaaaagctccgttagtggtgatgacatgtcctcttgcatgttgtgttgtcatgtacac 6818624  T
Q  116 gtggcaagaaggaagccacgtgt 138  Q
    ||| ||| |||| ||||||||||    
T  6818623 gtgtcaacaaggcagccacgtgt 6818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 31801950 - 31802023
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| || ||| | ||||| |||| ||||||||| | ||||| | |||| ||||||||||||||||    
T  31801950 aacatcaaaaacgtcattgacccttcttcttctcgctaaaacttcctccactttcactcctccaaaatcatcat 31802023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 8423341 - 8423195
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8423341 gaaatatcaatttaatccctgaatttatcagacgtcaatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctg 8423242  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  8423241 tgctgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 8423195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 35344350 - 35344204
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  35344350 gaaatatcaatttaatccctgaatttataagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgttgccttgcatgctg 35344251  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  35344250 tgctgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 35344204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 8423125 - 8423000
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  8423125 gcccctgcattacatattcctccttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcat 8423026  T
Q  317 ccctccaaaatcatcatgatgtccat 342  Q
    ||||||||||||||||| || |||||    
T  8423025 ccctccaaaatcatcatcatctccat 8423000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 35344134 - 35344009
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  35344134 gcccctgcattacatattcctccttcttcacattttactcagaaacatcaaaaacatccttaactcttctccttcccgctaaaacgttctccattgtcac 35344035  T
Q  317 ccctccaaaatcatcatgatgtccat 342  Q
    ||||||||||||||||| || |||||    
T  35344034 ccctccaaaatcatcatcatctccat 35344009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 46996744 - 46996616
Alignment:
Q  19 ctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtg 118  Q
    ||||||||||||||||||||| ||||||||||||||||  | | ||||||||||| |||||||  ||||||||| ||||||||| |||| ||||||||||    
T  46996744 ctgaatttgtcagacgtccatcaaaaaggtccctccgtccaagtgctccgttagcgatgctgatctgtcgccttgcatgctgtgttgtcttgtacgcgtg 46996645  T
Q  119 gcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||||||||||||||||||| |||||    
T  46996644 gcaagaaggaagccacgtgttcaaggacg 46996616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 46812642 - 46812497
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| |||||||  ||||| |||||||||||||||||| |||||||||  |||||  | | |||| |||||||||||||| |||||||| | |||||||    
T  46812642 gaaatatcaatttagtccctaaatttgtcagacgtccatcaaaaaggtcattccgtccaagtgctctgttagccatgctgatatgtcgccctgcatgctg 46812543  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || |||| |||||| |||||||||||||||||||||||||| ||||    
T  46812542 tgttgtcttgtacgtgtggcaagaaggaagccacgtgttcaaggac 46812497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 23953888 - 23954008
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    ||||||||||||||||| || ||||||||||||||||  | | ||||||||||||||||||| |||||||| | |||| |||| |||| ||||| |||||    
T  23953888 tgaatttgtcagacgtcaatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatatgtcgccatgcatgttgtgttgtcttgtacacgtgg 23953987  T
Q  120 caagaaggaagccacgtgttc 140  Q
    ||| |||||||||||||||||    
T  23953988 caaaaaggaagccacgtgttc 23954008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 40784626 - 40784741
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||||||||||| ||| |||||||| ||||| ||| ||| | |||||||||||||||||||| ||||||||| ||||    
T  40784626 gcccctgcattactcatacctccttcttcacatttcacttagaaacataaaaaatatcattgacccttctccttcccgctaaaactttctccattctcac 40784725  T
Q  317 ccctccaaaatcatca 332  Q
    ||||||||||||||||    
T  40784726 ccctccaaaatcatca 40784741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 33038650 - 33038534
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||| | || ||| ||||||||||||| ||||||||||||||||||| || ||  | |||| ||||||||||||||| |||||||||  |||    
T  33038650 gcccctgcattatacatacctccttcttcacatttcactcagaaacatcaaaaacgtcattaacccttccccttcccgctaaaactttctccattcccac 33038551  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  33038550 ccctccaaaatcatcat 33038534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 46812427 - 46812311
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || |||  |||||||||||| | |||||||||||||||||  ||||| |  ||||||||||| ||||||| ||||||||| ||||    
T  46812427 gcccctgcattactcatacctcattcttcacatttcagtcagaaacatcaaaaacgaccttgacctttctccttcccactaaaactttctccattctcac 46812328  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  46812327 ccctccaaaatcatcat 46812311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 47341534 - 47341418
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||||||||||| | | |||||||||||||||||||||| |  ||| |||| |||||||||| |||| |||| ||||    
T  47341534 gcccctgcattacccatacctccttcttcacatttcagtgagaaacatcaaaaacatccttgacatttcacctttccgctaaaactttcttcattctcac 47341435  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  47341434 ccctccaaaatcatcat 47341418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 2167558 - 2167688
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||||||||| |||| ||||||||||||||||  | | ||||| |||||||||||||| |||| || | |||| |||| |||| ||||| |    
T  2167558 tccctgaatttgtcagacgcccatcaaaaaggtccctccgtccaagtgctccattagccatgctgacgtgtcaccctgcatgatgtgttgtcttgtacac 2167657  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||| ||| |||||||| ||||| ||||    
T  2167658 gtggcaaaaagaaagccacgcgttcaaggac 2167688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 331
Target Start/End: Original strand, 2167753 - 2167867
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||| |||||  || ||| |||| |||||||| | ||||||||||||||||| || ||| | |||||||||||||||||||| ||||||||| ||||    
T  2167753 gcccctgtattacccatacctccttcctcacatttcaatcagaaacatcaaaaacgtctttgacccttctccttcccgctaaaactttctccattctcac 2167852  T
Q  317 ccctccaaaatcatc 331  Q
    | |||||||||||||    
T  2167853 ctctccaaaatcatc 2167867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 38613771 - 38613860
Alignment:
Q  244 tcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||| ||||||||||||||||||  || ||| | |||||||||||||||||||| ||||| ||| ||||| |||||||||||||||    
T  38613771 tcacatttcactcagaaacatcaaaaatgtcattgacccttctccttcccgctaaaactttctctattctcacctctccaaaatcatcat 38613860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 47341731 - 47341597
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgc----ctttcatgctgtgctgtcctgt 111  Q
    ||||||||||||||||||||  || ||||||||  ||||||  | | |||||||||||||||  ||||||||||    | | ||||||||| |||| |||    
T  47341731 tccctgaatttgtcagacgttaatcaaaaaggtatctccgtccaagtgctccgttagccatggggacatgtcgccctgcatgcatgctgtgttgtcttgt 47341632  T
Q  112 acgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || ||||||||||||||||||||||||||| ||||    
T  47341631 acacgtggcaagaaggaagccacgtgttcaaggac 47341597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 23954085 - 23954201
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||| |||||  || ||| |||| ||||||||   ||| |||||| |||||| |||||| |||||||||| || |||||||| ||||||||| ||||    
T  23954085 gcccctgtattacccatacctccttcctcacatttctttcataaacataaaaaacgtccttgactcttctcctacctgctaaaactttctccattctcac 23954184  T
Q  317 ccctccaaaatcatcat 333  Q
    | |||||||||||||||    
T  23954185 ctctccaaaatcatcat 23954201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 27955452 - 27955579
Alignment:
Q  19 ctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtg 118  Q
    ||||||||||||||||||||| ||| ||||||||||||  | | |||||||||| ||||||||  |||||   | |||| |||| |||| ||||| | ||    
T  27955452 ctgaatttgtcagacgtccatcaaagaggtccctccgtccaagtgctccgttagtcatgctgatgtgtcgtgctgcatgttgtgttgtcttgtacacttg 27955551  T
Q  119 gcaagaaggaagccacgtgttcagggac 146  Q
    |||| |||||||||| ||||||| ||||    
T  27955552 gcaacaaggaagccatgtgttcaaggac 27955579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 2492410 - 2492535
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    ||||||| ||| |||||||||||||| || |||||||| | | ||||||||||||||| |||  | |||||   |||||| ||||||| ||||| |||||    
T  2492410 tgaatttttcaaacgtccataaaaaa-gttcctccgttcaagtgctccgttagccatgttgatctatcgcccaacatgctctgctgtcttgtacacgtgg 2492508  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    ||| ||||||| |||||||||| ||||    
T  2492509 caaaaaggaagtcacgtgttcaaggac 2492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 33038842 - 33038712
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||| |||||||||||| ||||||||||||||||  | | |||| ||||| |||| |||  ||||| | | |||| |||| |||| | ||| |    
T  33038842 tccctgaatttttcagacgtccatcaaaaaggtccctccgtccaagtgctctgttaggcatgttgatctgtcgtcctgcatgttgtgttgtcttatacac 33038743  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||| |||||||||||||| ||||||| ||||    
T  33038742 gtgtcaagaaggaagccatgtgttcaaggac 33038712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 27955687 - 27955764
Alignment:
Q  255 tcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||| |||||| |||||| | ||||| ||||||||| |||| ||| ||||| ||||| |||||||||||||||    
T  27955687 tcagaaacattaaaaacgtccttgacccttctgcttcccgcttaaaccttc-ccattctcacctctccaaaatcatcat 27955764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 40784429 - 40784555
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||| ||||| ||||||||||||||||  |   || | ||||  ||||||||  ||||| | | |||| |||| |||| | ||| |||||    
T  40784429 tgaatttgtcagacatccatcaaaaaggtccctccgtccaaatgcgctgttaatcatgctgatctgtcgtcctgcatgttgtgttgtcttatacacgtgg 40784528  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    ||||||||||||||| |||||| ||||    
T  40784529 caagaaggaagccacatgttcaaggac 40784555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 46996512 - 46996436
Alignment:
Q  260 aacatcaaaaacatccttggc---tcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| |||||| |   |||||| |||| ||||||||| | ||||||| |||||||||||||||||||||    
T  46996512 aacatcaaaaacgtccttgacccttcttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcat 46996436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 38614956 - 38614892
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctga 81  Q
    ||||||||||||||||||||||||| |||| ||||||||||  | | |||| ||||||||||||||    
T  38614956 tccctgaatttgtcagacgtccata-aaaatgtccctccgtctaagtgctctgttagccatgctga 38614892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 38613526 - 38613492
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtcc 50  Q
    |||||||||||||||||||||||||||||| ||||    
T  38613526 tccctgaatttgtcagacgtccataaaaaatgtcc 38613492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 23168392 - 23168481
Alignment:
Q  244 tcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||| ||||||| |||||||| ||||| ||| |  |||||||||||| |||||| ||  ||||  | ||| |||||||||||||||    
T  23168392 tcacatttcactcagacacatcaaacacatcattgacctttctccttcccgttaaaacctttaccatcttaacctctccaaaatcatcat 23168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 6694 - 6548
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  6694 gaaatatcaatttaatccctgaatttatcagacctccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcaccttgcatgctg 6595  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  6594 tgctgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 6548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 15372564 - 15372709
Alignment:
Q  2 aaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgt 101  Q
    |||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||    
T  15372564 aaatatcaatttaatccctgaatttatcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctaacatgtcgccttgcatgttgt 15372663  T
Q  102 gctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  15372664 gctgtcttgtacgcgtggcaagaaggaagccacgtgttcagggacg 15372709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 41706603 - 41706749
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| ||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41706603 gaaatatcaatttaatccctgaatttatcgaacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctg 41706702  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  41706703 tgctgtcttgtacgcgtggcaagaaggaagtcacgtgttcagggacg 41706749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 15372780 - 15372904
Alignment:
Q  218 cccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacc 317  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |    
T  15372780 cccctgcattacatattcctccttcttcacattttactcagaaacatcaaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcaac 15372879  T
Q  318 cctccaaaatcatcatgatgtccat 342  Q
    |||||||||||||||| || |||||    
T  15372880 cctccaaaatcatcatcatctccat 15372904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 39803 - 39929
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||    
T  39803 gcccctgcattacatattcctccttcttcacattttagtcagaaacatcaaaaacatccttgactcttctccttcccgctaaaactttctccattctcac 39902  T
Q  317 ccctccaaaatcatcatgatgtccatc 343  Q
    ||||||||||||||||| || ||||||    
T  39903 ccctccaaaatcatcatcatctccatc 39929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 39442 - 39312
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||| ||| ||||||||||| ||||  | | | ||||||||||||||||| |||||| ||| ||||||||| |||| |||||||    
T  39442 tccctgaatttgtcagacgttcatcaaaaaggtccccccgtccaagtgttccgttagccatgctgatatgtcgtcttgcatgctgtgttgtcttgtacgc 39343  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||||||||    
T  39342 gtggcaagaaggaagccacgtgttcagggac 39312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 92388 - 92262
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||| ||| ||||||||||||| ||  | | ||||||||||||||||||| |||||| ||| ||||||||| |||| |||||| ||||    
T  92388 tgaatttgtcagacgttcatcaaaaaggtccctcagtccaagtgctccgttagccatgctgatatgtcgtcttgcatgctgtgttgtcttgtacgtgtgg 92289  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||||    
T  92288 caagaaggaagccacgtgttcagggac 92262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 41706819 - 41706935
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||| ||||||||| |||||||||||||||||||         |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41706819 gcccctgcatttcatattcctccttcttcacattttactca---------aaaacatccttgactcttctccttcccgctaaaacgttctccattgtcac 41706909  T
Q  317 ccctccaaaatcatcatgatgtccat 342  Q
    ||||||||||||||||| || |||||    
T  41706910 ccctccaaaatcatcatcatctccat 41706935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 37417352 - 37417482
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| |||||||||||| |||  | | |||||||||||||||||||  ||| ||| | ||||||||| |||| ||||| |    
T  37417352 tccctgaatttgtcagacgtccatcaaaaaggtcccttcgtccaagtgctccgttagccatgctgatctgttgccctgcatgctgtgttgtcttgtacac 37417451  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||| ||||    
T  37417452 gtggcaagaaggaagccacgtgttcaaggac 37417482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 29909720 - 29909575
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| |||||||  ||||| |||||||||||||||||| ||||||||||||||||  | | |||| |||||||||| |||  |||||| || |||| ||    
T  29909720 gaaatatcaatttagtcccttaatttgtcagacgtccatcaaaaaggtccctccgtccaagtgctctgttagccatgttgatctgtcgcgttgcatgttg 29909621  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || |||| ||||||||||||||||||||||||||||||| ||||||    
T  29909620 tgttgtcttgtacgcgtggcaagaaggaagccacgtgttaagggac 29909575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 42879438 - 42879559
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||||||| ||||||||||||||||  | | | |||||||| |||||||| |||||||| | ||||||||| |||| ||||| ||||     
T  42879438 tgaatttgtcagacgtccatcaaaaaggtccctccgtccaagtgttccgttagtcatgctgatatgtcgccctgcatgctgtgttgtcttgtacacgtga 42879537  T
Q  120 caagaaggaagccacgtgttca 141  Q
    ||||||||||| ||||||||||    
T  42879538 caagaaggaagtcacgtgttca 42879559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 15432627 - 15432721
Alignment:
Q  239 cttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||||||| | |||||||||||||||||||| |||||  | |||||||||||| |||| ||| ||||| |||||||||||||||||||||    
T  15432627 cttcttcacatttcagtcagaaacatcaaaaacatctttggccttcctccttcccgctcaaactttcaccattctcacccctccaaaatcatcat 15432721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 37417585 - 37417674
Alignment:
Q  244 tcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||  |||||||||||||||||| |||||| ||||||||||||||||||||||  |||||||| ||||| |||||||| ||||||    
T  37417585 tcacatttctctcagaaacatcaaaaacgtccttgactcttctccttcccgctaaaactgtctccattctcacctctccaaaaccatcat 37417674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 42001893 - 42001998
Alignment:
Q  221 ctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccct 320  Q
    |||||||||  || ||| ||||||||||||| | |||||||||||||||||||| |||   |||||||||||||||||||| ||| ||||| ||||||||    
T  42001893 ctgcattacccatacctccttcttcacatttcagtcagaaacatcaaaaacatcattgatccttctccttcccgctaaaactttccccattatcacccct 42001992  T
Q  321 ccaaaa 326  Q
    ||||||    
T  42001993 ccaaaa 42001998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 25619943 - 25620049
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||||||||||| |||||||||||| |||||| |||||| | |||||||||  || |||||| ||||||||| ||||    
T  25619943 gcccctgcattacccatacctccttcttcacatttcactcagaaacataaaaaacgtccttgacccttctccttttcgataaaactttctccattctcac 25620042  T
Q  317 ccctcca 323  Q
    |||||||    
T  25620043 ccctcca 25620049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 15432392 - 15432537
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| |||||||  || ||||||||||||||||||||| |||||||| | | |||  | | ||||  |||| ||||||||||||||||| | |||| ||    
T  15432392 gaaatatcaatttagtctctgaatttgtcagacgtccatcaaaaaggttcattcgtccaagtgctctattagtcatgctgacatgtcgccctgcatgttg 15432491  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || |||| ||||| |||||||||||||||| || ||||||| ||||    
T  15432492 tgttgtcttgtacacgtggcaagaaggaagtcatgtgttcaaggac 15432537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 39620 - 39709
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcc 90  Q
    ||||| ||||||| |||||||||||| |||| |||| || ||||||||||||||||  | | ||| ||||||||||||||||||||||||    
T  39620 gaaatatcaatttaatccctgaatttatcaggcgtcgattaaaaaggtccctccgtccaagtgcttcgttagccatgctgacatgtcgcc 39709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 29909469 - 29909396
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| |||||| | ||||| |||||||||||||| | ||||||| ||||||||||||||| |||||    
T  29909469 aacatcaaaaacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaattatcat 29909396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 340
Target Start/End: Complemental strand, 39243 - 39125
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||||||||||    |||| ||||| |||||| |||||| | ||||| |||| |||||| || | ||||||| ||||    
T  39243 gcccctgcattacccatacctccttcttcacatt----tcag-aacataaaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcac 39149  T
Q  317 ccctccaaaatcatcatgatgtcc 340  Q
    ||||||||||||||||| ||||||    
T  39148 ccctccaaaatcatcatcatgtcc 39125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 25619739 - 25619869
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||||| | |||||| |||||||||||||| |  | | ||||||||||||||| |||  ||||||  | |||| || | |||| | ||| |    
T  25619739 tccctgaatttgtcatatgtccatcaaaaaggtccctccatccaagtgctccgttagccatgttgatctgtcgctctgcatgttgcgttgtcttatacac 25619838  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||| |||||||| |||||| ||||    
T  25619839 gtggcaagaaagaagccacatgttcaaggac 25619869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 42879617 - 42879712
Alignment:
Q  239 cttcttcacattttactcagaaacat-caaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||| ||||||||  |||||||||||  |||||| |||||| |||||||| |||  |||||||| ||||||||| ||||| |||||||| ||||||    
T  42879617 cttcctcacatttctctcagaaacataaaaaaacgtccttgactcttctctttcttgctaaaactttctccattctcacctctccaaaaccatcat 42879712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42001674 - 42001818
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||| |||||||||||||| || || |||||||| | ||| |  | | ||| ||||||||||| |||  ||||||| | |||| ||    
T  42001674 gaaatatcaatttaatccttgaatttgtcagacatc-atcaaaaaggttcatccatccaagtgcttcgttagccatgttgatgtgtcgccctgcatgttg 42001772  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
     | |||| ||||| |||| ||||||||||| |||||||||| ||||    
T  42001773 agttgtcttgtacacgtgacaagaaggaagtcacgtgttcaaggac 42001818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 92148 - 92081
Alignment:
Q  266 aaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||| |||||| | ||||| |||| |||||| || | ||||||| |||||||||||||||||||||    
T  92148 aaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcacccctccaaaatcatcat 92081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 11315378 - 11315340
Alignment:
Q  18 cctgaatttgtcagacgtccataaaaaaggtccctccgt 56  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  11315378 cctgaatttgtcagacgtccatcaaaatggtccctccgt 11315340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 31201203 - 31201057
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  31201203 gaaatatcaatttaatccctgaatttatcagacgtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgatg 31201104  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggacg 147  Q
    || |||| |||| ||||||||||||||||| || |||||||||||||    
T  31201103 tgttgtcttgtatgcgtggcaagaaggaagtcatgtgttcagggacg 31201057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 8654780 - 8654893
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||||||||||||||   ||| |||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||    
T  8654780 gcccctgcattacatatt---tctccttcacatttcagtcagaaacatcaaaaacatcattgactcttctccttcccgctaaaactttctccattctcac 8654876  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  8654877 ccctccaaaatcatcat 8654893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 38882851 - 38882712
Alignment:
Q  7 tcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgt 106  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||  | | ||||||||||||||| |||  ||||| | | ||||||||| |||    
T  38882851 tcaatttaatccctgaatttgtcagacgtccataaaaaatgtccctccgtccaagtgctccgttagccatgttgatctgtcgtcctgcatgctgtgttgt 38882752  T
Q  107 cctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    | ||||| |||||||| ||||||| |||||||||| ||||    
T  38882751 cttgtactcgtggcaacaaggaagtcacgtgttcaaggac 38882712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 1320696 - 1320826
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||||||||||||||||| ||||||| |||||  | | | ||||| ||||||| |||||||||||| | |||||| || |||| ||||| |    
T  1320696 tccctgaatttgtcagacgtccataaataaggtccttccgtccaagtgttccgtcagccatggtgacatgtcgccctgcatgctatgttgtcttgtacac 1320795  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||| ||||    
T  1320796 gtggcaagaaggaagccacgtgttcaaggac 1320826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 42897815 - 42897689
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||||||| ||||||||||||||||  | | |||| ||||||||||||||  ||||| | | ||||||||| |||| ||||| |||||    
T  42897815 tgaatttgtcagacgtccatcaaaaaggtccctccgtccaagtgctctgttagccatgctgatctgtcgtcctgcatgctgtgttgtcttgtacacgtgg 42897716  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||| ||||    
T  42897715 caagaaggaagccacgtgttcaaggac 42897689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 31200987 - 31200871
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||| |||||||||||||||| |||||||||||||||||||         |||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  31200987 gcccttgcattacatattcctccttcttcacattttactca---------aaaacatccttgacttttctctttcccgctaaaacgttctccattgtcac 31200897  T
Q  317 ccctccaaaatcatcatgatgtccat 342  Q
    ||||||||||||||||| || |||||    
T  31200896 ccctccaaaatcatcatcatctccat 31200871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 8654582 - 8654708
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    ||||||| |||||||||||| |||| |||||||||||  | | |||||||||||||||||||||||||||| | |||||  || |||| ||||| |||||    
T  8654582 tgaatttatcagacgtccatcaaaagggtccctccgtccaagtgctccgttagccatgctgacatgtcgccctgcatgcaatgttgtcttgtacacgtgg 8654681  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    ||||||||||||||| |||||| ||||    
T  8654682 caagaaggaagccacatgttcaaggac 8654708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 33750429 - 33750298
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||| | ||| ||||||||||||||||  | | |||| |||||| ||| |||  ||||| ||| |||| |||| |||| |||||||    
T  33750429 tccctgaatttgtcagacattcatcaaaaaggtccctccgtccaagtgctctgttagcgatgttgatctgtcgtcttgcatgttgtgttgtcttgtacgc 33750330  T
Q  116 gtggcaagaaggaagccacgtgttcagggacg 147  Q
    |||||||||||||||||| |||||||||||||    
T  33750329 gtggcaagaaggaagccatgtgttcagggacg 33750298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 32822440 - 32822569
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||||||| |||||| |||||||||| |||||  | | |||  |||||| |||||||  ||||||| | |||||| || |||| |||||||    
T  32822440 tccctgaatttgtcagatgtccatcaaaaaggtccttccgtccaagtgctttgttagc-atgctgatctgtcgccatgcatgctttgttgtcttgtacgc 32822538  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||||||||    
T  32822539 gtggcaagaaggaagccacgtgttcagggac 32822569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 42897617 - 42897501
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || | | |||| ||||||||  ||||||||||| |||||| | |||| |||||||||||||||||||||| ||||||||| ||||    
T  42897617 gcccctgcattaccgatacttccttcctcacatttctctcagaaacataaaaaacgttcttgactcttctccttcccgctaaaactttctccattctcac 42897518  T
Q  317 ccctccaaaatcatcat 333  Q
    | |||||||| ||||||    
T  42897517 cactccaaaaccatcat 42897501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 37525846 - 37525755
Alignment:
Q  242 cttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||| ||||| || ||| |||||   ||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||||    
T  37525846 cttcacatttcactcataagcataaaaaatggccttgactcttctccttcccgctaaaactttcttcattctcacccctccaaaatcatcat 37525755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 38882603 - 38882523
Alignment:
Q  253 actcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| |||||| || ||| | |||||||||||| ||||| | ||||||||| ||||| |||||||||||||||    
T  38882603 actcagaaacataaaaaacgtcattgacccttctccttcccactaaagccttctccattttcaccgctccaaaatcatcat 38882523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 462214 - 462111
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||| ||||  || ||| ||||||| || || |||||||||||| || ||| || ||| | |||||||||||||||||||| ||||||||| ||||    
T  462214 gcccctgcgttacccatacctccttcttcgcagttcactcagaaacataaagaacgtcattgacccttctccttcccgctaaaactttctccattctcac 462115  T
Q  317 ccct 320  Q
    ||||    
T  462114 ccct 462111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 37526068 - 37525938
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||| |||||| ||||| ||||||||||||||||  | | || | ||||| |||| |||  ||||| | |  ||| |||| |||| | ||| |    
T  37526068 tccctgaatttttcagacatccatcaaaaaggtccctccgtccaagtgcgctgttagtcatgttgatctgtcgtcctgtatgttgtgttgtcttatacac 37525969  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||| ||||    
T  37525968 gtggcaagaaggaagccacgtgttcaaggac 37525938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 462411 - 462300
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    ||||||||||| |||||||| |||||| ||||||| |  | | |||| ||||||||||||||  ||||||| | |||| |||| | || | ||| |||||    
T  462411 tgaatttgtcaaacgtccatcaaaaagatccctccatccaagtgctctgttagccatgctgatttgtcgccgtgcatgttgtgttatcttatacacgtgg 462312  T
Q  120 caagaaggaagc 131  Q
    ||||||||||||    
T  462311 caagaaggaagc 462300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 33750191 - 33750118
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| |||||| | ||| | |||| ||||||||| | || |||| |||||||||||||||||||||    
T  33750191 aacatcaaaaacgtccttgaccctttttcttctcgctaaaacttccttcattttcacccctccaaaatcatcat 33750118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 32822641 - 32822757
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||| ||||||  || ||| ||||||||||||| | ||||||| || |||||| || ||| | |||||||||||| ||||||| || | |||| || |    
T  32822641 gcccctacattacccatacctccttcttcacatttcagtcagaaaaataaaaaacgtcattgacccttctccttcccactaaaactttattcattctcgc 32822740  T
Q  317 ccctccaaaatcatcat 333  Q
    | || ||||||||||||    
T  32822741 ctcttcaaaatcatcat 32822757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 31821497 - 31821618
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||| |||||| |||||||||||| ||||||||||||||||  | |  ||| ||||||| ||||||  ||||| ||| |||| |||| |||| |||        
T  31821497 tcccagaatttatcagacgtccatcaaaaaggtccctccgtccaagtcctctgttagccttgctgatctgtcgtcttgcatgatgtgttgtcttgt---- 31821592  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
         ||||||||||||||||||||||||||    
T  31821593 -----aagaaggaagccacgtgttcagggac 31821618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 9184695 - 9184784
Alignment:
Q  244 tcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||| ||||||| |||||||| || ||| ||    ||||||||||||||||||| |||  |||  ||||| |||||||||||||||    
T  9184695 tcacatttcactcagacacatcaaatacgtccatgatctttctccttcccgctaaaaccttcatcatcttcacctctccaaaatcatcat 9184784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 31821725 - 31821798
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||| |||||  |||||| | ||||| |||  ||||||||| | ||||||| |||||||||||||||||||||    
T  31821725 aacataaaaaatgtccttgacccttcttcttatcgctaaaacttcctccattttcacccctccaaaatcatcat 31821798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 18728647 - 18728517
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||  | | |||| ||||||| ||||||  |||| |||| ||||||||| |||| ||||| |    
T  18728647 tccctgaatttgtcagacgtccatcaaaaaggtccctccgtccaagtgctctgttagccttgctgatctgtcaccttgcatgctgtgttgtcttgtacac 18728548  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||| ||||||    
T  18728547 gtggcaagaaggaagccacgtgttaagggac 18728517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 32087593 - 32087723
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||| ||||| |||||||||||| ||||||||||||||||  | | |||| ||||||| ||||||  | ||||||| ||||||||| |||| |||||||    
T  32087593 tcccttaatttttcagacgtccatcaaaaaggtccctccgtccaagtgctctgttagccttgctgatctatcgccttgcatgctgtgttgtcttgtacgc 32087692  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||||||||    
T  32087693 gtggcaagaaggaagccacgtgttcagggac 32087723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 35395397 - 35395540
Alignment:
Q  1 gaaatttcaatttcatccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctg 100  Q
    ||||| |||||||  | ||||||||||| |||||||||| ||||||||||||||||  | | |||| |||||||||||||| |||||||||| ||||  |    
T  35395397 gaaatatcaatttagttcctgaatttgttagacgtccatcaaaaaggtccctccgtccaagtgctctgttagccatgctgatatgtcgccttgcatg--g 35395494  T
Q  101 tgctgtcctgtacgcgtggcaagaaggaagccacgtgttcagggac 146  Q
    || |||| |||||||||||||||||||||||||| |||||||||||    
T  35395495 tgttgtcttgtacgcgtggcaagaaggaagccacatgttcagggac 35395540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 33256483 - 33256609
Alignment:
Q  20 tgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtgg 119  Q
    |||||||||||||||||||| ||||| ||||||||||  | |  ||||||||||| ||||||  |||| |||| ||||||||| |||| |||||| ||||    
T  33256483 tgaatttgtcagacgtccatcaaaaaagtccctccgtccaagtcctccgttagccttgctgatctgtcaccttgcatgctgtgttgtcttgtacgagtgg 33256582  T
Q  120 caagaaggaagccacgtgttcagggac 146  Q
    |||||||||||||||||||||||||||    
T  33256583 caagaaggaagccacgtgttcagggac 33256609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 43318105 - 43317975
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||||||||||||||||||||||||||||  | | |||| ||||||||||| || ||||||||   |||| ||||||||| |||||      
T  43318105 tccctgaatttgtcagacgtccataaaaaaggtccctccgtccaagtgctctgttagccatgccgatatgtcgcccagcatgttgtgctgtcttgtacat 43318006  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||| |||||||||||||||||| ||||    
T  43318005 gtggcaaaaaggaagccacgtgttcaaggac 43317975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 38178135 - 38178008
Alignment:
Q  19 ctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtg 118  Q
    ||||||||||||||||||||| |||||||||||| |||  | | ||||||||||||||||||| |||||| | | ||||||||| |||| ||||| |||     
T  38178135 ctgaatttgtcagacgtccatcaaaaaggtcccttcgtccatgtgctccgttagccatgctgatatgtcgtcctgcatgctgtgttgtcttgtacacgta 38178036  T
Q  119 gcaagaaggaagccacgtgttcagggac 146  Q
    |||| ||||||| |||||||||| ||||    
T  38178035 gcaaaaaggaagtcacgtgttcaaggac 38178008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 38205359 - 38205232
Alignment:
Q  19 ctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgcgtg 118  Q
    ||||||||||||||||||||| |||||||||||| |||  | | ||||||||||||||||||| |||||| | | ||||||||| |||| ||||| |||     
T  38205359 ctgaatttgtcagacgtccatcaaaaaggtcccttcgtccatgtgctccgttagccatgctgatatgtcgtcctgcatgctgtgttgtcttgtacacgta 38205260  T
Q  119 gcaagaaggaagccacgtgttcagggac 146  Q
    |||| ||||||| |||||||||| ||||    
T  38205259 gcaaaaaggaagtcacgtgttcaaggac 38205232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 38597024 - 38597154
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||| |||||||||||||||||| ||||||||||||| ||  | | | |||||||||| ||||||  ||||||| | ||||||||| |||| ||||| |    
T  38597024 tcccttaatttgtcagacgtccatcaaaaaggtccctctgtccaagtgttccgttagccgtgctgatctgtcgccctgcatgctgtgttgtcttgtacac 38597123  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||||||||||||| |||||||| ||||    
T  38597124 gtggcaagaaggaagccgcgtgttcaaggac 38597154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 35292231 - 35292115
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    ||||||| |||||  || ||| |||| |||||||  ||||||||||||||||||||||||||   |||||||||||| ||||||| ||||||||| ||||    
T  35292231 gcccctgtattacccatacctccttcctcacattccactcagaaacatcaaaaacatccttgatccttctccttccccctaaaactttctccattctcac 35292132  T
Q  317 ccctccaaaatcatcat 333  Q
    | |||||||||||||||    
T  35292131 ctctccaaaatcatcat 35292115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 35292427 - 35292297
Alignment:
Q  16 tccctgaatttgtcagacgtccataaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    ||||||||||||||||||||||||||||||||| |||||||  |   ||||||||||| || ||||  |||||||   |||| ||||||||| ||||| |    
T  35292427 tccctgaatttgtcagacgtccataaaaaaggttcctccgtccaaatgctccgttagctattctgatctgtcgcccaacatgttgtgctgtcttgtacac 35292328  T
Q  116 gtggcaagaaggaagccacgtgttcagggac 146  Q
    ||||||| |||||||| ||||||||| ||||    
T  35292327 gtggcaaaaaggaagctacgtgttcaaggac 35292297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 32838352 - 32838236
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || | | |||| ||||||||  ||||||||||| |||||| || ||| |||||||||||||||||||||| ||||||||| ||||    
T  32838352 gcccctgcattacccatacttccttcctcacatttctctcagaaacataaaaaacgtcattgactcttctccttcccgctaaaactttctccattctcac 32838253  T
Q  317 ccctccaaaatcatcat 333  Q
    | |||||||| ||||||    
T  32838252 ctctccaaaaccatcat 32838236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 38177936 - 38177820
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || | | |||| ||||||||  ||||||||||| |||||| |||||| ||||||||||||| |||||||| ||||||||| ||||    
T  38177936 gcccctgcattacccatacttccttcctcacatttctctcagaaacataaaaaacgtccttgactcttctccttcctgctaaaactttctccattctcac 38177837  T
Q  317 ccctccaaaatcatcat 333  Q
    | |||||||| ||||||    
T  38177836 ctctccaaaaccatcat 38177820  T

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Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 38205160 - 38205044
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || | | |||| ||||||||  ||||||||||| |||||| |||||| ||||||||||||| |||||||| ||||||||| ||||    
T  38205160 gcccctgcattacccatacttccttcctcacatttctctcagaaacataaaaaacgtccttgactcttctccttcctgctaaaactttctccattctcac 38205061  T
Q  317 ccctccaaaatcatcat 333  Q
    | |||||||| ||||||    
T  38205060 ctctccaaaaccatcat 38205044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 35395609 - 35395720
Alignment:
Q  217 gcccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcac 316  Q
    |||||||||||||  || ||| ||||||||||||    |||| ||||||||| || |||||| | ||||| |||||||||||||| | ||||||| ||||    
T  35395609 gcccctgcattacccatacctccttcttcacatt----tcag-aacatcaaacacgtccttgacccttcttcttcccgctaaaacttcctccattttcac 35395703  T
Q  317 ccctccaaaatcatcat 333  Q
    |||||||||||||||||    
T  35395704 ccctccaaaatcatcat 35395720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 18728446 - 18728336
Alignment:
Q  218 cccctgcattacatattccttcttcttcacattttactcagaaacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacc 317  Q
    ||||||||||||  || ||| ||||||||||||    |||| |||||||||||| || ||| | ||||| |||| ||||||||| | ||||||| |||||    
T  18728446 cccctgcattacccatacctccttcttcacatt----tcag-aacatcaaaaacgtctttgacccttcttcttctcgctaaaacttcctccattttcacc 18728352  T
Q  318 cctccaaaatcatcat 333  Q
    ||||||||||||||||    
T  18728351 cctccaaaatcatcat 18728336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 32087831 - 32087904
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    |||||||||||| |||||| | ||||| |||| ||||||||| | |||||||  ||||||||||||||||||||    
T  32087831 aacatcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccatttccacccctccaaaatcatcat 32087904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 43317870 - 43317801
Alignment:
Q  264 tcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||||||||| | |||||||| ||| ||||||| ||||||||| ||||| | |||||||||||||    
T  43317870 tcaaaaacatccttgacccttctcctcccccctaaaactttctccattctcacctccccaaaatcatcat 43317801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 32838545 - 32838420
Alignment:
Q  19 ctgaatttgtcagacgtccataaa---aaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctttcatgctgtgctgtcctgtacgc 115  Q
    |||||||||||||||| |||| ||   |||||||  || || || | |||||||||| |||| ||| |||||| | | ||||||||| |||| ||||| |    
T  32838545 ctgaatttgtcagacgaccattaattaaaaggtctttctgtcaaagtgctccgttagtcatgttgatatgtcgtcctacatgctgtgttgtcttgtacac 32838446  T
Q  116 gtggcaagaaggaagccacgtgttca 141  Q
     | |||||||||||||||||||||||    
T  32838445 atagcaagaaggaagccacgtgttca 32838420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 33256716 - 33256789
Alignment:
Q  260 aacatcaaaaacatccttggctcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 333  Q
    ||||||||||||  ||||| | ||||| |||| | ||||||| | ||||||| |||||||||||||||||||||    
T  33256716 aacatcaaaaacgaccttgacacttcttcttctcactaaaacttcctccattttcacccctccaaaatcatcat 33256789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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