View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9582_low_14 (Length: 274)
Name: NF9582_low_14
Description: NF9582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9582_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 12585251 - 12585506
Alignment:
| Q |
13 |
aaggagacctaattcaagctatgggccaagccaaatgaatataggaggttct-tttttccaatgggccaaggtttcactagcttgtataaata------- |
104 |
Q |
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| T |
12585251 |
aaggagacctaattcaaactttgggccaggccaaatgaatatagtacgttccatttttccaatgggccaaggttgcactagcttgtattcatatcataaa |
12585350 |
T |
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| Q |
105 |
----aaatgttatttgcagctctcctttctcattactacaatgctttaatattcatagcttcgatatcaatgtttcatctcaacaatcaagctgtttagt |
200 |
Q |
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| T |
12585351 |
acaaaaatgttatttgcagctct--tttctcattactacaatgctttaatattcatagcttcgatagcactgtttcatctcaacaatcaagctgtttagt |
12585448 |
T |
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| Q |
201 |
tgaatcaatgacataaaccaaaaactagacaaaatgtcctgttagtgaagaaattaat |
258 |
Q |
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| T |
12585449 |
tgaatcaatgacataaaccaaaaactagacaaaatgtcccgttagtgaagaaattaat |
12585506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 28633505 - 28633241
Alignment:
| Q |
4 |
tttaaaactaaggagacctaattcaagctatgggccaagccaaatgaatataggaggttctt-ttttccaatgggccaaggtttcactagcttgtataaa |
102 |
Q |
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||||||| ||||||||||||||||| || ||||||| |||||| |||||||| | |||| |||||||||||||||||||| ||||||||||||| | |
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| T |
28633505 |
tttaaaatcaaggagacctaattcaaactttgggccaggccaaacgaatatagtatgttccggttttccaatgggccaaggttgcactagcttgtattca |
28633406 |
T |
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| Q |
103 |
ta-----------aaatgttatttgcagctctcctttctcattactacaatgctttaatattcatagcttcgatatcaatgtttcatctcaacaatcaag |
191 |
Q |
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| T |
28633405 |
tatcataaaacaaaaatgttatttgcagctct--tttctcattactacaatgctttaatattcatagcttcgatatcattgtttcatctcaacaatcaag |
28633308 |
T |
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| Q |
192 |
ctgtttagttgaatcaatgacataaaccaaaaactagacaaaatgtcctgttagtgaagaaattaat |
258 |
Q |
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| T |
28633307 |
ctgtttagttgaatcaatgacataaaccaaaaactatacaaaatgtcccgttagttaagaaattaat |
28633241 |
T |
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