View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9582_low_17 (Length: 242)
Name: NF9582_low_17
Description: NF9582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9582_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10095332 - 10095113
Alignment:
| Q |
1 |
ccaatccttccaaggcatgataacggatcc-aacaccgcaattactgggggtatcaaagtctaatggtgaagtaactattca-tcaaggatagaaagctt |
98 |
Q |
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| T |
10095332 |
ccaatccttccaaggcatgataacggatcccaactccgcaattactgggg-tatcaaagtctaatggtgaagtaactataaggtcaaggatagaaagctt |
10095234 |
T |
|
| Q |
99 |
ttattcaaaggatgatcaagaagacctcttcaaagcttttgttcatcaagatacctgatcctgtgaaaatatctagcgtcttcttcgtggggtgaatcaa |
198 |
Q |
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| T |
10095233 |
ttattcaaaggatga---agaagacctcttcaaagcttttgttcatcaagatacct---ccggtgaaaatatctagcgtcttcttcgtggggtgaatcaa |
10095140 |
T |
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| Q |
199 |
tcctttgcataaggcagggatgattat |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
10095139 |
tcctttgcataaggcagggatgattat |
10095113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10034963 - 10034749
Alignment:
| Q |
1 |
ccaatccttccaaggcatgataacggatcc-aacaccgcaattactgggggtatcaaagtctaatggtgaagtaactattcatcaaggatagaaagcttt |
99 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
10034963 |
ccaatccttccaaggcatgataacggatcccaactccgcaattactgggg-tatcaaagtctaatggtgaagtaactata----aagtatagaaagcttt |
10034869 |
T |
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| Q |
100 |
tattcaaaggatgatcaagaagacctcttcaaagcttttgttcatcaagatacctgatcctgtgaaaatatctagcgtcttcttcgtggggtgaatcaat |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
10034868 |
tattcaaaggatga---agaagacctcttcaaagcttttgttcatcaagatacct---ccggtgaaaatatctagcgtcttcttcgtggggtgaatcaat |
10034775 |
T |
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| Q |
200 |
cctttgcataaggcagggatgattat |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10034774 |
cctttgcataaggcagggatgattat |
10034749 |
T |
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