View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9582_low_23 (Length: 202)
Name: NF9582_low_23
Description: NF9582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9582_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 23984324 - 23984162
Alignment:
| Q |
13 |
attatactgattgcaggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
112 |
Q |
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| T |
23984324 |
attatactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatatttttttttgttatatggaatcattatggtgcggccggttgttaaacatg |
23984225 |
T |
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| Q |
113 |
agtaactcctcaatgaagtttctaacctgcaaatggatcaa-gggaagaaaaaagatattaatt |
175 |
Q |
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| T |
23984224 |
agtaactcctcaatgaagtttctaacctgcaaat-gatcaaggggaagaaaaaagatattaatt |
23984162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 23967392 - 23967259
Alignment:
| Q |
13 |
attatactgattgcaggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23967392 |
attatactgattgcgggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
23967293 |
T |
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| Q |
113 |
agtaactcctcaatgaagtttctaacctgcaaat |
146 |
Q |
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| T |
23967292 |
agtaactcctcaatgaagtttctaacctgcaaat |
23967259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 23990986 - 23990822
Alignment:
| Q |
13 |
attatactgattgcaggagaaggtttcgtttcaaccacatcaatgtaatattttttattgttatatggaatcattatagtgcggccagttgttaaacatg |
112 |
Q |
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|||||||||||||| ||||||||||| |||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
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| T |
23990986 |
attatactgattgcgggagaaggttttgtttcaactatatcaatataatattttttgttgttatatggaatcattatagtgcgtccggttgttaaacatg |
23990887 |
T |
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| Q |
113 |
agtaactcctcaatgaagtttctaacctgcaaatggatcaa-gggaagaaaaaagatattaattag |
177 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
23990886 |
agtaactcctcaatgaagtttctaacctgcaaat-gatcaaggggaagaaaaaagatattaattag |
23990822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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