View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9582_low_6 (Length: 391)
Name: NF9582_low_6
Description: NF9582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9582_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 32617953 - 32617571
Alignment:
| Q |
1 |
tactctataatttgaacacctttgatttgaaggagtataaatatcagtgataaaatttggcctattttattgttttcatccttgctactgcaataagaaa |
100 |
Q |
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|||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
32617953 |
tactctataatttgaacaccgttggttcgaagaagtataaatatcagtgataaaatttggcatattttattgttttaatccttgctactgcaataagaaa |
32617854 |
T |
|
| Q |
101 |
ataatttttgctttagacgttttatttatggacttaatgggtgtcagtggttgggtttagttttccattcaaaatggtacatgatttgtgttaatttttt |
200 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32617853 |
ataatttttgctttagacattttagttatggacttaatgagtttcagtggttgggtttagttttccattcaaaatggtacatgatttgtgttaatttttt |
32617754 |
T |
|
| Q |
201 |
ccctcttatattttctatcttctttttgttaagtttatacattttcatattcaaattgggtgttgttggtcttttcttcacatttctaattgagatatga |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32617753 |
cccacttatattttctatcttctttttgttaagtttatacattttcacattcaaattgagtgatgttggtcttttcttcacatttctaattgagatatga |
32617654 |
T |
|
| Q |
301 |
atgaagactatttcagattcctcataattaatgtcacagaagccacatcagccttacacccagtattgatattctagaataat |
383 |
Q |
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|||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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| T |
32617653 |
atgaaggctatttcggattcctcataactaatgtcacaggagccacatcagccttacacccaatcttgatattctagaataat |
32617571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 14604961 - 14605348
Alignment:
| Q |
1 |
tactctataatttgaacacctttgatttgaaggagtataaatatcagtgataa---aatttggcctattttattgttttcatccttgctactgcaataag |
97 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14604961 |
tactctataatttgaacacctttggtttgaaggagtataaatatcagtgataataaaatttggcctattttattgttttaatccttgctactgcaataag |
14605060 |
T |
|
| Q |
98 |
aaaataatttttgctttagacgttttatttatggacttaatgggtgtcagtggttgggtttagttttccattcaaaatggtacatgatttgtgttaattt |
197 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14605061 |
aaaataatttttgctttagacattttagttatggacttaatggattttagtggttgggtttagtttttcattcaaaatggtacatgatttgtgttaattt |
14605160 |
T |
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| Q |
198 |
tttccctcttatattttctatcttctttttgttaagtttatacattttcatattcaaattgggtgttgttggtcttttcttcacatttctaattgagata |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
14605161 |
tttccctcttatattttctatcttctttttgttaagtttatacattttcccattcaaattgagtgttgttggttttttcttcacatttctaattgagata |
14605260 |
T |
|
| Q |
298 |
tgaatgaagactatttcagattcctcataatt--aatgtcacagaagccacatcagccttacacccagtattgatattctagaataat |
383 |
Q |
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||||||||| ||||||| |||||||||||| | ||||||| || |||||||||||| |||||||||| |||||||||||||||||| |
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| T |
14605261 |
tgaatgaaggctatttcggattcctcataactaaaatgtcagaggagccacatcagctttacacccagccttgatattctagaataat |
14605348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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