View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9582_low_9 (Length: 372)
Name: NF9582_low_9
Description: NF9582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9582_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 109 - 328
Target Start/End: Original strand, 24320795 - 24321018
Alignment:
| Q |
109 |
ttatatgatggaatcacaagaaaaaagaaactccactactcttgcacatgcattaaatatagcgaaaagttttttcattatgacttgttttaattctatg |
208 |
Q |
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| T |
24320795 |
ttatatgatggaatcacaagaaaaaagaaactccactactcttgcacatgcattaaatatagcgaaaagttttttcattatgacttgttttaattctatg |
24320894 |
T |
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| Q |
209 |
atcattaccaatat----gtaaaatcataaaaatttactgttggtttctgtagtcatatcaaagatgatgtaaactgctctttttctgagaaaatttgca |
304 |
Q |
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| T |
24320895 |
atcattaccaatatgtaagtaaaatcataaaaatttactgttggtttccgtagtcatatcaaagatgatgtaaactgctctttttctgagaaaatttgca |
24320994 |
T |
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| Q |
305 |
tgaggatcattttgctgatattgt |
328 |
Q |
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| T |
24320995 |
tgaggatcattttgctgatattgt |
24321018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 24320639 - 24320775
Alignment:
| Q |
1 |
ttcagtcgatttttaggtacgagccaagtatacggcactcccatgcacctatca-----aagtgatataatatagaatttgcctatagtgtcaaagcaac |
95 |
Q |
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| T |
24320639 |
ttcagtcgatttttaggtacgagccaagtatacggcactcccatgcacctatcaaagctaagtgatataatatagaatttgcctatagtgtcaaagcaac |
24320738 |
T |
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| Q |
96 |
atgtgggttatacttatatgatggaatcacaagaaaaaagaaa |
138 |
Q |
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| T |
24320739 |
atgtggg------ttatatgatggaatcacaagaaaaaagaaa |
24320775 |
T |
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