View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_high_3 (Length: 396)
Name: NF9583_high_3
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 866623 - 866243
Alignment:
| Q |
1 |
tcgaaaacccccctttcgtcgtcgtactctaacgtctcctcttttcctgcctcccaatcacagcttcctccctttttacatacgccgctgttgctgctgt |
100 |
Q |
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| T |
866623 |
tcgaaaaccccgctatcgttgtcgtactcgaacgtctcctcttttcctgcctcccaatcacagcttcctccctttttacatacgccgctgttgctgctgt |
866524 |
T |
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| Q |
101 |
tggaattcaaaattctgcttattattttatgttttttaattgttgtttctattggttgtattccattccgaggatttcttcgtttaagatgaataataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866523 |
tggaattcaaaattctgcttattattttatgttttttaattgttgtttctattggttgtattccattccgaggatttcttcgtttaagatgaataataat |
866424 |
T |
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| Q |
201 |
gctaggtttcatggtggtgaagctcctaaagatagttatatacttggtccattagagagctgtgttcatgcattgtatttggtttttgcgcctatatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866423 |
gctaggtttcatggtggtgaagctcctaaagatagttatatacttggtccattagagagctgtgttcatgcattgtatttggtttttgcgcctatatgtt |
866324 |
T |
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| Q |
301 |
ttcatattggatcgcattactcggttgtgttttcgtcgtacgccaatttctgtgatttggttttgttgttttttgtgccgt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866323 |
ttcatattggatcgcattactcggttgtgttttcgtcgtacgccaatttctgtgatttggttttgttgttttttgtgccgt |
866243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 1227900 - 1227520
Alignment:
| Q |
1 |
tcgaaaacccccctttcgtcgtcgtactctaacgtctcctcttttcctgcctcccaatcacagcttcctccctttttacatacgccgctgttgctgctgt |
100 |
Q |
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||||||||||| || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1227900 |
tcgaaaaccccgctatcgttgtcgtactcgaacgtctcctcttttcctgcctcccaatcacagcttcctccctttttacatacgccgctgttgctgctgt |
1227801 |
T |
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| Q |
101 |
tggaattcaaaattctgcttattattttatgttttttaattgttgtttctattggttgtattccattccgaggatttcttcgtttaagatgaataataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1227800 |
tggaattcaaaattctgcttattattttatgttttttaattgttgtttctattggttgtattccattccgaggatttcttcgtttaagatgaataataat |
1227701 |
T |
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| Q |
201 |
gctaggtttcatggtggtgaagctcctaaagatagttatatacttggtccattagagagctgtgttcatgcattgtatttggtttttgcgcctatatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1227700 |
gctaggtttcatggtggtgaagctcctaaagatagttatatacttggtccattagagagctgtgttcatgcattgtatttggtttttgcgcctatatgtt |
1227601 |
T |
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| Q |
301 |
ttcatattggatcgcattactcggttgtgttttcgtcgtacgccaatttctgtgatttggttttgttgttttttgtgccgt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1227600 |
ttcatattggatcgcattactcggttgtgttttcgtcgtacgccaatttctgtgatttggttttgttgttttttgtgccgt |
1227520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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