View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_1 (Length: 604)
Name: NF9583_low_1
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 589
Target Start/End: Complemental strand, 40274690 - 40274117
Alignment:
| Q |
16 |
taggccaacgaggggggagattagatgcaaggggtaagtgggcgtttgactcatgaatgtaatggttatctatgattcttctctctcacacaaacaaaca |
115 |
Q |
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| T |
40274690 |
taggccaacgaggagggagattacatgcaaggggtaagtgagcgtttgactcataaatgtaatggttatatatgattattctctctcacacaaacaaaca |
40274591 |
T |
|
| Q |
116 |
atcaaacccctccataactctccaaattttttagttttcctaatatctaaattttcttgaaccatcacattaaatataactttgnnnnnnnnnnnnnnnn |
215 |
Q |
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| T |
40274590 |
atcaaacccctccataactctccaaattttttagttttcctaatatctaaattttcttgaaccatcacattaaatataactttgaaaaataaaaacaaca |
40274491 |
T |
|
| Q |
216 |
nnngacaatatgcatcgtcttctttgacagccatacaaccactttcaagagacttgttacttgaaatggttgcaactttaatctctcaatctcttcgtga |
315 |
Q |
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| T |
40274490 |
agagacaatatgcatcgtcttctttgacagccatacaaccactttcaagagacttgttacttgaaatggttgcaactctaatttctcaatctcttcgtga |
40274391 |
T |
|
| Q |
316 |
cattcataaaatgaaacgtgttgnnnnnnntttcttcaagttattaaagaaaattacgtgttacaaaaaatttatttagataaattctcattattccaat |
415 |
Q |
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| T |
40274390 |
cattcataaaatgaaacgtgttggaaaaaatttcttcaagttattaaagaaaattaggtattacaaaaaatttctttagataaattttcattattccaat |
40274291 |
T |
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| Q |
416 |
ggttttctaaagagaaagttttgtcctttttaaaacgttgcatggaaagtgaaaatatggaaataatatttagagaaggattacgagaatactttagtta |
515 |
Q |
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| T |
40274290 |
ggttttctaaagagaaagttttgttctttttaaaacgttgcatggaaagtaaaaatatggaaataatatttagagaaggattgcgagaatactttaatca |
40274191 |
T |
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| Q |
516 |
ttcgagtagaaacatttatggttttgagaaattaaatattgttgttcaatagggtcataagatcatatcataca |
589 |
Q |
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| T |
40274190 |
ttcgagtagaaacatttatggttttgagaaattaaatattgttgttcaatagggtcataagatcatatcataca |
40274117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 225 - 556
Target Start/End: Original strand, 40273753 - 40274084
Alignment:
| Q |
225 |
atgcatcgtcttctttgacagccatacaaccactttcaagagacttgttacttgaaatggttgcaactttaatctctcaatctcttcgtgacattcataa |
324 |
Q |
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| T |
40273753 |
atgcatcattttctttgactaccatacaatcacttccaagagccttgttacatgagacggttgcaactgtaatctctcaaccttttcttgacattcacaa |
40273852 |
T |
|
| Q |
325 |
aatgaaacgtgttgnnnnnnntttcttcaagttattaaagaaaattacgtgttacaaaaaatttatttagataaattctcattattccaatggttttcta |
424 |
Q |
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| T |
40273853 |
catgaaatgtcttgaaaagattttcctcaagtcattgaagaacattacgtgttacaaaaaaaatctgcagacaatttcttatgaatcaaatggtttccta |
40273952 |
T |
|
| Q |
425 |
aagagaaagttttgtcctttttaaaacgttgcatggaaagtgaaaatatggaaataatatttagagaaggattacgagaatactttagttattcgagtag |
524 |
Q |
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| T |
40273953 |
acaagaaagtgttgtcctttttaaaatgttgcatagaaagtgaaaatatggaaatcatgtttagagaaggattgcgagaacactttagttatttgagtgg |
40274052 |
T |
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| Q |
525 |
aaacatttatggttttgagaaattaaatattg |
556 |
Q |
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| T |
40274053 |
aaacatttgtggttttgagaaattaaatattg |
40274084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 556
Target Start/End: Complemental strand, 45993481 - 45993298
Alignment:
| Q |
373 |
gtgttacaaaaaatttatttagataaattctcattattccaatggttttctaaagagaaagttttgtcctttttaaaacgttgcatggaaagtgaaaata |
472 |
Q |
| |
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||||||||| |||||| ||| || || || |||| ||||||||||| || ||||| || | ||| ||||||| | ||||| | ||||||||||||| |
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| T |
45993481 |
gtgttacaacaaatttctttcgacaattttccattgatccaatggtttctgaatgagaacgtatcgtcttttttaagaagttgcttagaaagtgaaaata |
45993382 |
T |
|
| Q |
473 |
tggaaataatatttagagaaggattacgagaatactttagttattcgagtagaaacatttatggttttgagaaattaaatattg |
556 |
Q |
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| T |
45993381 |
cggaaataatatttagagaaggattgcttgaatactttggctatccaaatggaaatattgatggtcttgagagattaaagattg |
45993298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 40273638 - 40273727
Alignment:
| Q |
110 |
caaacaatcaaacccctccataactctccaaattttttagttttcctaatatctaaattttcttgaaccatcacattaaatataactttg |
199 |
Q |
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| T |
40273638 |
caaacaatcaaaaccctccctaactcttcgagttttttaatttacccaagatctaaattttcttgaaccatgacatttagtacaactttg |
40273727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 26706973 - 26706910
Alignment:
| Q |
16 |
taggccaacgaggggggagattagatgcaaggggtaagtgggcgtttgactcatgaatgtaatg |
79 |
Q |
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||||||||||| ||| ||||||||||| |||||||||| | | |||||||||||| ||||||| |
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| T |
26706973 |
taggccaacgaagggagagattagatgtaaggggtaagcgaccatttgactcatgattgtaatg |
26706910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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