View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_10 (Length: 372)
Name: NF9583_low_10
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 28418250 - 28417908
Alignment:
| Q |
20 |
tcaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattcttcc |
119 |
Q |
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| T |
28418250 |
tcaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattcttcc |
28418151 |
T |
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| Q |
120 |
taaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctc |
219 |
Q |
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| T |
28418150 |
taaacctcaccaacaatttatttatctttcagaatctttgaatc----ataaaagcttttgacagtggaggaaatggtagaaggatcagccatttctctc |
28418055 |
T |
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| Q |
220 |
--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaac |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28418054 |
atattagtttgcatgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacatacaac |
28417955 |
T |
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| Q |
318 |
catccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
364 |
Q |
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| T |
28417954 |
catccattgatggtgcaacgaacatcggcttctcgtagtcccatgct |
28417908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 28584983 - 28585326
Alignment:
| Q |
21 |
caatgtgtacaagagatcaa-gaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtc-gttaaaacattcttc |
118 |
Q |
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| T |
28584983 |
caatgtgtacaagagatcaaagagcatgctactatccaaagcaacactctagaagacaatgatattctcttgtttttcacagtccgttaaaacattcttc |
28585082 |
T |
|
| Q |
119 |
ctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctct |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || || ||||||||||||||||||||||||||||| |
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| T |
28585083 |
ctaaacctcaccaacaatttatttatctttcaaaatctttgaatcata----aaagcttttgacggtcgaagaaatggtagaaggatcagccatttctct |
28585178 |
T |
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| Q |
219 |
cat--tagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaa |
316 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28585179 |
catattagtttgcatgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacatacaa |
28585278 |
T |
|
| Q |
317 |
ccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
364 |
Q |
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| T |
28585279 |
ccatccattgatggtgcaacaaacatcggcttctcgtagtcccatgct |
28585326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 28404815 - 28404473
Alignment:
| Q |
21 |
caatgtgtacaagagatcaaga----acatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattct |
116 |
Q |
| |
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||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||| | |
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| T |
28404815 |
caatgtgtacatgagatcaagagcatgcatgctactgtccaaagcaacactctaggagacaatgatattcttttgttttgtacaatggttataac---tt |
28404719 |
T |
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| Q |
117 |
tcctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
28404718 |
tcctaaacctcaccaacaatttatttatctttcagaatatttgaatc----ataaaagcttttgacggtcgaaaaaatggtagaaggatcagccatttct |
28404623 |
T |
|
| Q |
217 |
ctc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacatac |
314 |
Q |
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||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28404622 |
ctcatatttgttggcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacatac |
28404523 |
T |
|
| Q |
315 |
aaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
364 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
28404522 |
aaccatccattgatggtgcaacgaacatcggcttctcgtagtcccatgct |
28404473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 168 - 364
Target Start/End: Original strand, 28580128 - 28580326
Alignment:
| Q |
168 |
ataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctcat--tagtttgcatgtgttgaacaggtgggatgagagtaacaccaagc |
265 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |||| | ||||||||||||| |
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| T |
28580128 |
ataaaagcttttgacattggaggaaatggtagaaggatctgccatttctctcatattagttggcatgtgttcaacaggttggataacagtaacaccaagc |
28580227 |
T |
|
| Q |
266 |
tcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
364 |
Q |
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| |||||| ||||| | | |||||||||||||| ||||||||||| | ||| |||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
28580228 |
ttttcaatcctcatcaattgttgttctgtgaaaggatttctccacatggcatcattcattgacggtgcaacaaacatcggcttctcgtagtcccatgct |
28580326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 358
Target Start/End: Original strand, 27834771 - 27834806
Alignment:
| Q |
323 |
attgatggtgcaacaaacatcggcttctcgtagtcc |
358 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
27834771 |
attgatggtgcaacaaacaccggcttctcgtagtcc |
27834806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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