View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_11 (Length: 370)
Name: NF9583_low_11
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 24563317 - 24563658
Alignment:
| Q |
19 |
cctacttggttacaccgcgatatatcgaagttctttgtccaaatgtctctgaagttcttttaggaacagcaacttcaacagtgtttgtactattttcacc |
118 |
Q |
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| T |
24563317 |
cctactttgttacaccgcgatatatcgaagttctttgtccaaatgtctctgaagttcttttaggaacagcaacttcaacagtgtttgtactattttcacc |
24563416 |
T |
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| Q |
119 |
actagtttcacatgttgaatctttaccacttcccatggataatgtcaaagactgcaaattactattactagccttctcttgatactcattggtgcatgtt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24563417 |
actagtttcacatgttgaatctttaccacttcccatggataatgtcaaagactgcaaattactattactagccttttcttgatactcattggtgcatgtt |
24563516 |
T |
|
| Q |
219 |
gtaaccatttggttttgcattggcatgagagtattgttatttgtaaacagataatctgaatcattagattgaatttcgttcggtgtagcaagatctgaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24563517 |
gtaaccatttggttttgcattggcatgagagtattgttatttgtaaacagataatctgaatcattagattgaatttcgttcggtgtagcaagatctgagt |
24563616 |
T |
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| Q |
319 |
gattttcagacttgcatacaccgagaaaatccgcaacctttg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563617 |
gattttcagacttgcatacaccgagaaaatccgcaacctttg |
24563658 |
T |
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