View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9583_low_12 (Length: 366)
Name: NF9583_low_12
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 9466067 - 9465731
Alignment:
| Q |
20 |
atgtaatcatgttcggatcaattaacatttatatgtttgcnnnnnnngtctccaatagtgtagcataataggagcacctacttgtacttaaaacatacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466067 |
atgtaatcatgttcggatcaattagcatttatatgtttgctttttttgtctccaatagtgtagcataataggagcacctacttgtacttaaaacatacaa |
9465968 |
T |
|
| Q |
120 |
taaatacgcaaatattgttcatgtcttcctccttgttttcccgagtttctacatgctatgtagatcaattttcttcctgcttgttttcttggtgttatat |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9465967 |
taaatacgcaaatagtgttcatgtcttcctccttgttttcccgagtttctacatgctatgtagatcaattttcttcctgcttgttttcttggtgttatat |
9465868 |
T |
|
| Q |
220 |
ttcccccctttgtcggttaccgccgctgccactgtgagacnnnnnnnncttcccatgtatcagaccacacgactgcacacataaattgtttgaaggaaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9465867 |
ttcccccctttgtcggttaccgccgctgccactgtgagacttttttttcttcccatgtatcagaccacacgactgcacacataaattgtttgaaggaaaa |
9465768 |
T |
|
| Q |
320 |
agaactgcctataatttccgactcacaattacctttg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9465767 |
agaactgcctataatttccgactcacaattacctttg |
9465731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University