View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_13 (Length: 315)
Name: NF9583_low_13
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9443668 - 9443938
Alignment:
| Q |
1 |
cattattaaaaatcacctcattctttttcttccaaataacccaaatagaagcaagccaaattaagaaaaatcccggtctcattttcaaag---gagcctc |
97 |
Q |
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| T |
9443668 |
cattattaaaaatcacctcattctttttcttccaaataacccaaatagaatcaagccaaattaagaaaaatacccgtctcattttcaaagaaggagcctc |
9443767 |
T |
|
| Q |
98 |
ataatactaacattcaaaatgtgnnnnnnngattatgtggtattacgaaatgaaaatgtagcctagacatcaccctttgccacaccttcaacaccacctc |
197 |
Q |
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| T |
9443768 |
ataataccaccattcaaaatgtgaaaaaa-gattatgtggtattacgaaatgaaaatgtagcacagacatcaccctttgccacaccttcaacaccacctc |
9443866 |
T |
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| Q |
198 |
acaatgcnnnnnnngatgcaacgttgtttcctccacccttctgcacaatacacaatttctcgattcctccac |
269 |
Q |
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| T |
9443867 |
acaatgcaaaaaaagatgcaacgtcgtttcctccacccttctgcacaatacacaatttctcgattcctccac |
9443938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 9443930 - 9444008
Alignment:
| Q |
225 |
ttcctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcaccctt |
303 |
Q |
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| T |
9443930 |
ttcctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcaccctt |
9444008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 4282237 - 4282062
Alignment:
| Q |
1 |
cattattaaaaatcacctcattctttttcttccaaataacccaaatagaagcaagccaaattaagaaaaatcccggtctcattttc---aaaggagcctc |
97 |
Q |
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| T |
4282237 |
cattattaaagataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaagcaaaatccccgtcttattttcctagatgaagcctc |
4282138 |
T |
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| Q |
98 |
ataatactaacattcaaaatgtgnnnnnnngattatgtggtattacgaaatgaaaatgtagcctagacatcaccctt |
174 |
Q |
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| T |
4282137 |
ataataccaacattcaaaat-tagcaaaaagattacgtggtataatgaaattaaattgtagcctagacatcaccctt |
4282062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 28800812 - 28800637
Alignment:
| Q |
128 |
gattatgtggtattacgaaatgaaaatgtagcctagacatcaccctttgccacaccttcaacaccacctcacaatgcnnnnnnngatgcaacgttgtttc |
227 |
Q |
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||||||||||||||| ||||| ||| || | || ||||||||| ||| |||||||||||| |||||||||||||||| |||| | || ||||| |
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| T |
28800812 |
gattatgtggtattaagaaattaaattggaaccaagacatcactcttcgccacaccttcatcaccacctcacaatgcaagaaaagatgtgatgtcgtttc |
28800713 |
T |
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| Q |
228 |
ctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcaccctt |
303 |
Q |
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| T |
28800712 |
ctccacccttccgcacaacacacaattcttcgacgccttcccattcaaccctcctctagtcgcaaggttcaccctt |
28800637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 303
Target Start/End: Complemental strand, 17192927 - 17192794
Alignment:
| Q |
170 |
ccctttgccacaccttcaacaccacctcacaatgcnnnnnnngatgcaacgttgtttcctccacccttctgcacaatacacaatttctcgattcctccac |
269 |
Q |
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||||||||||||||||||| || |||||| ||||| | || |||| |||||||||||||| | ||||| ||||||||| ||||| ||||| | |
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| T |
17192927 |
ccctttgccacaccttcaaaacaacctcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgc |
17192828 |
T |
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| Q |
270 |
attcaacactcctctatacgctagattcaccctt |
303 |
Q |
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| T |
17192827 |
attcaacactcctctagacactaggttcaccctt |
17192794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 17193066 - 17193033
Alignment:
| Q |
28 |
tcttccaaataacccaaatagaagcaagccaaat |
61 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
17193066 |
tcttccaaataacccaaatagaagcaagccaaat |
17193033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25290610 - 25290537
Alignment:
| Q |
1 |
cattattaaaaatcacctcattctttttcttccaaataacccaaatagaagcaagccaaattaagaaaaatccc |
74 |
Q |
| |
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||||||| ||||| | ||||||| ||| ||||||||| || |||||||| ||||||||||| || |||||||| |
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| T |
25290610 |
cattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaatccc |
25290537 |
T |
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