View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_14 (Length: 313)
Name: NF9583_low_14
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 53558033 - 53557739
Alignment:
| Q |
1 |
ttagagttttgaaggctaatttggatcattttttcttgagaaggatgcaactttggccaaactagtgcagcagggttattactgtaaaaagacaaagggt |
100 |
Q |
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| T |
53558033 |
ttagagttttgaaggctaatttggatcattttttcttgagaaggatgcaactttggccaaactagtgcagcagggttattattgtaaaaagacaaagggt |
53557934 |
T |
|
| Q |
101 |
tttgaaggctttgaagttgcatatgaagttgaagtctctcaagagctgagctacttaatgaatttgaataagaattctcatctattccatttgtgtcctt |
200 |
Q |
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| T |
53557933 |
tttgaaggctttgaagttgcatatgaagttgaagtctctcaagagctgagctacttaatgaatttgaataagaattctcatctattccatttgtgtcctt |
53557834 |
T |
|
| Q |
201 |
ttggttcatcaagctgttgttgatatttgactgttttcgctttccgagtaatttcttcttcaatcttgtgttccaatagttttttatgtcattgt |
295 |
Q |
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|||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557833 |
ttggttcatcaagcagttgtttatattcgactgttttcgctttccgagtaatttcttcttcaatcttgtgttccaatagttttttatgtcattgt |
53557739 |
T |
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