View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_15 (Length: 297)
Name: NF9583_low_15
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 2101625 - 2101905
Alignment:
| Q |
1 |
tgacagaaagataatagagatcaagtttgcacacctcttctcctttgcttccatgtctcaaggtctgcaggaatgagtccttttcccataattggttcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101625 |
tgacagaaagataatagagatcaagtttgcacacctcttctcctttgcttccatgtctcaaggtctgcaggaatgagtccttttcccataattggttcta |
2101724 |
T |
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| Q |
101 |
ggatatcagcgagtactccctagtttttcaattaacaagcacaagc-nnnnnnntatatgatttgaaaatgaagtacaaaatagaaagttagaaactaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101725 |
ggatatcagcgagtactccctagtttttcaattaacaagcacaagcaaaaaaaaaatatgatttgaaaatgaagtacaaaatagaaagttagaaactaaa |
2101824 |
T |
|
| Q |
200 |
tgaataacgcaggcacgtcaattcacaagaaaaccaaagtatcaaattcaagctcatgtaatccaagggtagcacattctt |
280 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101825 |
tgaatagcgcaggcacgtcaattcacaagaaaaccaaagtatcaaattcaagctcatgtaatccaagggtagcacattctt |
2101905 |
T |
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