View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_17 (Length: 285)
Name: NF9583_low_17
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 29233759 - 29234034
Alignment:
| Q |
1 |
gtggatagagtgctcagatggctcattggggccaattttaagcactgcacgccatttagcgaaacgtgcaccagcttcatagtacttagcacaacaagca |
100 |
Q |
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| T |
29233759 |
gtggatagagtgctcagatggctcattggggccgattttaagcactgcacgccatttagcgaaacgtgcaccagcttcatagtacttagcacaacgagca |
29233858 |
T |
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| Q |
101 |
ccaagtccatcaagaccctgagtggtggtttctccatcagttccggcaagctcaatggtacccttgtcaaccttgataccagaaagcacaccagcttcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29233859 |
ccaagtccatcaagaccctgagtggtggtttctccatcagttccggcaagctcaacggtacccttgtcaaccttgataccaggaagcacaccagcttcgt |
29233958 |
T |
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| Q |
201 |
tcaagacatcaacaaaaggcttgccta---------acattcatgtaagtgtacaagaacaacaacaatgtcatca |
267 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29233959 |
tcaagacatcaacaaaaggcttgcctaaaaaaaaatacattcatgtaagtgtacaagaacaacaacaatgtcatca |
29234034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 29237509 - 29237787
Alignment:
| Q |
1 |
gtggatagagtgctcagatggctcattggggccaattttaagcactgcacgccatttagcgaaacgtgcaccagcttcatagtacttagcacaacaagca |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29237509 |
gtggatagagtgctcagatggctcattggggccgattttaagcactgcacgccatttagcgaaacgtgcaccagcttcatagtacttagcacaacgagca |
29237608 |
T |
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| Q |
101 |
ccaagtccatcaagaccctgagtggtggtttctccatcagttccggcaagctcaatggtacccttgtcaaccttgataccagaaagcacaccagcttcgt |
200 |
Q |
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| T |
29237609 |
ccaagtccatcaagaccctgagtggtggtttctccatcagttccggcaagctcaacggtacccttgtcaaccttgataccaggaagcacaccagcttcgt |
29237708 |
T |
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| Q |
201 |
tcaagacatcaacaaaaggcttgccta------------acattcatgtaagtgtacaagaacaacaacaatgtcatca |
267 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29237709 |
tcaagacatcaacaaaaggcttgcctaaaaaaaaataatacattcatgtaagtgtacaagaacaacaacaatgtcatca |
29237787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 26630045 - 26630142
Alignment:
| Q |
119 |
tgagtggtggtttctccatcagttccggcaagctcaatggtacccttgtcaaccttgataccagaaagcacaccagcttcgttcaagacatcaacaaa |
216 |
Q |
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||||| ||||||||||| | || |||||||| |||| ||| |||||||||||||||||||||| ||| || ||||||| ||||| ||||| ||||| |
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| T |
26630045 |
tgagttgtggtttctccgtttgtgccggcaagttcaacggttcccttgtcaaccttgataccaggaagaactccagctttcttcaacacatccacaaa |
26630142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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