View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9583_low_19 (Length: 273)
Name: NF9583_low_19
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_19 |
 | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0069 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 15837 - 15583
Alignment:
| Q |
17 |
gtactggatcctttttgcatcaaagaactttcatcttccttgctcacttttttcttccgtctctgcaactatcttcctaaattgtcaattagtttttcta |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15837 |
gtactggatcctttttgtatcaaagaactttcatcttccttgctcacttttttcttccgtctctgcaactatcttcctaaattgtcaattagtttttcta |
15738 |
T |
|
| Q |
117 |
ttgttatttgttgaaaatttaccaatctttctatgcatcaaacacccatcaattcatttaattgttctacagttgaattggcaaaatcaatctgatataa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15737 |
ttgttatttgttgaaaatttaccaatctttctatgcatcaaacacccatcaattcatttaattgttctacagttgaattggcaaaatcaatctgatataa |
15638 |
T |
|
| Q |
217 |
gattaatcgtaataaaaaatcatccttttcattctatttgaaaaattctaattca |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15637 |
gattaatcgtaataaaaaatcatccttttcattctatttgaaaaattctaattca |
15583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 19069112 - 19069051
Alignment:
| Q |
110 |
ttttctat-tgttatttgttgaaaatttaccaatctttctatgcatcaaacacccatcaattc |
171 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19069112 |
ttttctatgtgttatttgttgggaatttaccaat-tttctatgcatcaaacacccatcaattc |
19069051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 19068981 - 19068944
Alignment:
| Q |
227 |
aataaaaaatcatccttttcattctatttgaaaaattc |
264 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19068981 |
aataaaaaatcatccttttcattctaattgaaaaattc |
19068944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University