View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_2 (Length: 529)
Name: NF9583_low_2
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 2 - 510
Target Start/End: Original strand, 884761 - 885268
Alignment:
| Q |
2 |
gtgaaacaaatgggccaagtgaagaaggaaaggaggaacacgtgaaggagaggaagaagaaaatggattttgattcttaccgtaaa-------------- |
87 |
Q |
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| T |
884761 |
gtgaaagaaatgggttaagtgaagaaagaaatgaggaacacgtgaaggagaggaagaagaaaatgaattttgattcttactgtaaaaaaaagggatagtg |
884860 |
T |
|
| Q |
88 |
--gaaaaatcaagaaacttttgtcttatataaaaatatccacaagtggaaaggacccttttgccctttttaaagtcataagcttcaattaccaaataacc |
185 |
Q |
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| T |
884861 |
aagaaaaatcaagaaacttttgtcttatataaaagtatccacaagtggaaaggacccttttgccctttttaaagtcataagcttcaattaccaaataacc |
884960 |
T |
|
| Q |
186 |
at--tctcttgaaggttgctgagatacacttaaagacaccaataactgactatgttttaagcgggatatttcattccct-tagcccgttggaataatata |
282 |
Q |
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|| |||| ||||||||||| | || |||||||||||| |||| |||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
884961 |
atattctcatgaaggttgctcatatgtacttaaagacac-------tgaccatgttttaagcgggatatttcattccctgtggtccgttggaataatata |
885053 |
T |
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| Q |
283 |
attcgatcctnnnnnnnnnntgttatgcacaattaccattatgtccttctctnnnnnnnttctaaggatagaataaatgatactgaatttttacatgcgg |
382 |
Q |
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| T |
885054 |
gttctattctgaaaag----tgttatgcacaattaccattatgcccttctctaaaaaaattcctaggatagaataattgat---------ttacatgcaa |
885140 |
T |
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| Q |
383 |
gatattacaaaatagattgtcattttgtgtcaattgattaataatgtgagcggaactctcacctaaaatttaatcattgtttcactacgttgcaaatagg |
482 |
Q |
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| T |
885141 |
gatattacaaaatagattgtcatttcgtgtcaattgattaataatgtgagtgtaactctcacctgaaatttaatcattgtttcactgcgttgcaaatagg |
885240 |
T |
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| Q |
483 |
gtgtttgcattcaaaacaaattgcataa |
510 |
Q |
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| T |
885241 |
gtgtttgcattcaaaccaaattgcataa |
885268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 502
Target Start/End: Original strand, 883012 - 883090
Alignment:
| Q |
424 |
taatgtgagcggaactctcacctaaaatttaatcattgtttcactacgttgcaaatagggtgtttgcattcaaaacaaa |
502 |
Q |
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| T |
883012 |
taatgtgagcgtaactctcacctgaaatttaatcatcatttcactcagttgtaaatagggtgtttacattcaaaccaaa |
883090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 884292 - 884352
Alignment:
| Q |
448 |
aaatttaatcattgtttcactacgttgcaaatagggtgtttgcattcaaaacaaattgcat |
508 |
Q |
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| T |
884292 |
aaatttaatcattgtttcacttctttgcaaataaggtgtttacattcaaaacaaactgcat |
884352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 884727 - 884765
Alignment:
| Q |
9 |
aaatgggccaagtgaagaaggaaaggaggaacacgtgaa |
47 |
Q |
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| T |
884727 |
aaatgggtcaagtgaagaaggaaaggaggaacacgtgaa |
884765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 19357469 - 19357427
Alignment:
| Q |
349 |
gatagaataaatgatactgaatttttacatgcgggatattaca |
391 |
Q |
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| T |
19357469 |
gataaaataactgatactgaatttttacatgcgggttattaca |
19357427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 392
Target Start/End: Original strand, 28146860 - 28146898
Alignment:
| Q |
354 |
aataaatgatactgaatttttacatgcgggatattacaa |
392 |
Q |
| |
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| T |
28146860 |
aataactgatactgaatttttacatgcgggatattacaa |
28146898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 5559725 - 5559768
Alignment:
| Q |
349 |
gatagaataaatgatactgaatttttacatgcgggatattacaa |
392 |
Q |
| |
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| T |
5559725 |
gataaaataactgatactgaatttttacatgcgggttattacaa |
5559768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 19804369 - 19804411
Alignment:
| Q |
349 |
gatagaataaatgatactgaatttttacatgcgggatattaca |
391 |
Q |
| |
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| T |
19804369 |
gataaaataactgatactgaatttttacatgcggggtattaca |
19804411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 41530360 - 41530402
Alignment:
| Q |
349 |
gatagaataaatgatactgaatttttacatgcgggatattaca |
391 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||| ||||||| |
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| T |
41530360 |
gataaaataattgatactgaatttttacatgcgggttattaca |
41530402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 2694247 - 2694203
Alignment:
| Q |
349 |
gatagaataaatgatactgaatttttacatgcgggatattacaaa |
393 |
Q |
| |
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|||| ||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
2694247 |
gataaaataactgatgctgaatttttacatgcggggtattacaaa |
2694203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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