View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_20 (Length: 251)
Name: NF9583_low_20
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 8597610 - 8597775
Alignment:
| Q |
4 |
tggtacaaacagggctgagaatttaacaagggatcaaaaagggaggggaaag----gaagagag-gatnnnnnnntttaattaaatatttttagtccaga |
98 |
Q |
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| T |
8597610 |
tggtacaaacagggctgagaatttaaaaagggatcgaaaagggaggggaaagaagagatgagattgataaatttttttaattaaatatttttagtccaga |
8597709 |
T |
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| Q |
99 |
aagggaaggatgagattttaaacttaatttacnnnnnnnattcttgtaatcttagaataatttaat |
164 |
Q |
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| T |
8597710 |
aagggaaggatgagattttaaacttaatttactttttttattcttgtaatcttacaataatttaat |
8597775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 8577315 - 8577189
Alignment:
| Q |
6 |
gtacaaacagggctgagaatttaacaagggatcaaaaagggaggggaaaggaagagaggatnnnnnnntttaatt--aaatatt-tttagtccagaaagg |
102 |
Q |
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| T |
8577315 |
gtacaaacagggctgagaaattaacaagggatcgaaaagggaggggaaaggaagagaggat-aaattttttaattaaaaatattgtttagtccacaaaat |
8577217 |
T |
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| Q |
103 |
gaaggatgagattttaaacttaatttac |
130 |
Q |
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| T |
8577216 |
gaaggatgagattttaaacttaatttac |
8577189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 8597855 - 8597923
Alignment:
| Q |
178 |
agggaagagaaaatatatatcaaaaaatttgagggtcgggttaattttacctctttatcctttgcttct |
246 |
Q |
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| T |
8597855 |
agggaagagaaaatatatatcaaaaaatttgagggtcgggttaattttacctctttgtcctttggttct |
8597923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 8577075 - 8577010
Alignment:
| Q |
181 |
gaagagaaaatatatatcaaaaaatttgagggtcgggttaattttacctctttatcctttgcttct |
246 |
Q |
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| T |
8577075 |
gaagagaaaatatatatcaaaaaatttgagggtcgggttaattttacctctttgtcctttgattct |
8577010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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