View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_21 (Length: 249)
Name: NF9583_low_21
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5674222 - 5673989
Alignment:
| Q |
1 |
caatcgattcacaaggtaaggcgccaagcccttataggggtaacacaccaccatcaatcaaggtgtcttcgtccattcattaaaaacctct-acccgcca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5674222 |
caatcgattcacaaggtaaggcgccaagcccttataggggtaacacaccaccatcaatcaaggtgtcttcgtccattcattaaaaacctctcacccgcca |
5674123 |
T |
|
| Q |
100 |
cccacccacgaattcgaagataaagcactttcttccattgatccaccttcacagcgagannnnnnnatctttctcgagattttggttctcccaaacataa |
199 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5674122 |
cccacccataaattcgaagataaagcaatttcttccattgatccaccttcacagcgagatttttttatctttctcgagattttggttctcccaaacataa |
5674023 |
T |
|
| Q |
200 |
aaccgataaattaaaatcacttgattaggtttct |
233 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
5674022 |
aaccgataaattaaaatcatttgattaggtttct |
5673989 |
T |
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