View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_23 (Length: 233)
Name: NF9583_low_23
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 27984035 - 27983850
Alignment:
| Q |
16 |
gcatagggcgagatgtagaagcgacgcgaaaggaatagagtcatggatagatgtgtaaggaagcctacatggggttcgggatcatgttgcttcattaggg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984035 |
gcatagggcgagatgtagaagcgacgcgaaaggaatggagttatggatagatgtgtaaggaagcctacatggggttcgggatcatgttgcttcattaggg |
27983936 |
T |
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| Q |
116 |
aggttgaaacccnnnnnnnnttaaaagagagttctaaaggcattgttctccctttgttgctcatgtaatccaactattgacattag |
201 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27983935 |
aggttgaaaccctaaaaaaattaaaagagagttctaaaggcattgttctccctttgttgctcatgtaatccaactattgacattag |
27983850 |
T |
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