View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_24 (Length: 229)
Name: NF9583_low_24
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_24 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6947808 - 6948025
Alignment:
| Q |
1 |
acaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaactatcttaacc |
100 |
Q |
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| T |
6947808 |
acaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataatcaacaaa-gcagtggcctctt---------aacc |
6947896 |
T |
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| Q |
101 |
atataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcat |
200 |
Q |
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| T |
6947897 |
atataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaacttcctcatcttccttgggacggtaagcat |
6947996 |
T |
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| Q |
201 |
tcacaatgttgaaaatcttactaatctcc |
229 |
Q |
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| T |
6947997 |
tcacaatgttgaaaatcttactaatctcc |
6948025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6950280 - 6950367
Alignment:
| Q |
1 |
acaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaac |
90 |
Q |
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| T |
6950280 |
acaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtctcttaac |
6950367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 11160986 - 11160878
Alignment:
| Q |
121 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
220 |
Q |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
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| Q |
221 |
ctaatctcc |
229 |
Q |
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| T |
11160886 |
cgaatctcc |
11160878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 143
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
112 |
tagagactaaaccctagactctaatcagtttt |
143 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 11179071 - 11179143
Alignment:
| Q |
157 |
attttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcc |
229 |
Q |
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| T |
11179071 |
attttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcc |
11179143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 661917 - 662045
Alignment:
| Q |
93 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
192 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||| ||| ||||| |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
193 |
gtaagcattcacaatgttgaaaatcttac |
221 |
Q |
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| T |
662017 |
gtaagcatttataatgttgaaaatcttac |
662045 |
T |
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