View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_25 (Length: 228)
Name: NF9583_low_25
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45515983 - 45516205
Alignment:
| Q |
1 |
cttaattaatacttacttctttgtttgcaattgttacattgtttccaattcttgcgtttttgtcaattatacattgccggcatacgagattcgagtcatg |
100 |
Q |
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| T |
45515983 |
cttaattaatacttacttctttgtttgcaattgttacattgtttccaattcttgcgtttttgtcaattatacatttcctgcatacgagattcgagtcatg |
45516082 |
T |
|
| Q |
101 |
atatataccaaatctatnnnnnnngatgcaacatgagagaaataaacaattgtaaatccaacacagaatatcatacgtatgccaagtatagtataattat |
200 |
Q |
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| T |
45516083 |
atatataccaaatctataaaaaaagatgcaacatgagagaaataaacaattgtaaatccaacacagaatatcatacgtatgccaagtatagtataattat |
45516182 |
T |
|
| Q |
201 |
tttcatatgccatgtaactgagt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45516183 |
tttcatatgccatgtaactgagt |
45516205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 25348691 - 25348800
Alignment:
| Q |
4 |
aattaatacttacttctttgtttgcaattgttacattgtttccaattcttgcgtttttgtcaattatacattgccggcatacgagattcgagtcatgata |
103 |
Q |
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|||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||| |||| |
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| T |
25348691 |
aattaatacttagttctttatttgcaattattacattgtttccaattcttgcgtttttgtcaattatatatttccttcatacaagattcgagtcacgata |
25348790 |
T |
|
| Q |
104 |
tataccaaat |
113 |
Q |
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| T |
25348791 |
tataccaaat |
25348800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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