View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_28 (Length: 206)
Name: NF9583_low_28
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 44552621 - 44552773
Alignment:
| Q |
1 |
aaatgataaggaaattgaaacttatgtgataagttgtggaaagaaattacgaagaaggtgcaagtgtttttacctgggtttctttgaagaagattgatga |
100 |
Q |
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| T |
44552621 |
aaatgataaggaaattgagccttatgtgataagttgtggaaataaattacgaagaaggtgtaagtgtttttacctggggttctttgaagaagattgatga |
44552720 |
T |
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| Q |
101 |
acatgatcatcaagatgaacaataagagatgaaataagatgaaaaaatggaga |
153 |
Q |
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| T |
44552721 |
acatgatcatcaagatgaacaataagagatggaataagatgaaaaaatggaga |
44552773 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 44552793 - 44552831
Alignment:
| Q |
168 |
tgtggatggttcactggttagcacaatgggtaatactcc |
206 |
Q |
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| T |
44552793 |
tgtggatggttcactagttagcacaatgggtaatgctcc |
44552831 |
T |
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