View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9583_low_3 (Length: 526)
Name: NF9583_low_3
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 526
Target Start/End: Complemental strand, 41079405 - 41078893
Alignment:
| Q |
20 |
tcgacctcattacccgt-----gcgccactgtcgccggtgagggcgaacgccaccacttgatgaagatttcgtagcacatccggattgtcaagtagatga |
114 |
Q |
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| T |
41079405 |
tcgacctcattacccgtctcaggcgccactgtcgccggtgaggatgaacgccaccacttgatgaagatttcgtagcacatccgaattgtcaagtagatga |
41079306 |
T |
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| Q |
115 |
aatctataaccaaggcagtgataatggataacataaaaacctggaagattgtgcgaaagttatccgaccaagacgatattgttggatttctgtttggaaa |
214 |
Q |
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| T |
41079305 |
aatctataaccaaggcagtgataatggataacataaaaacctggaagattgtgcgaaagttatccgaccaagacgacattgttggatttctgtttggaaa |
41079206 |
T |
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| Q |
215 |
atgaatgaagaaaacttgctgacaaagtagtttgtttgtttgtttataaaatagagtgagtttgataaaagaaaagagaagtaaatgaatatacattttt |
314 |
Q |
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| T |
41079205 |
atgaatgaagaaaacttggtgacaaagtagtttgtttatttgtttataaaatagagtgagtttgataaaagaaaagagaagtaaatgaatatacattttt |
41079106 |
T |
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| Q |
315 |
aaatcttggttttgaactagttagccccatcaatattgattttaactttccc-aactcgggatttatgttgcaattagacgccaatttgtaggagctctt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41079105 |
caatcttggttttgaactagttagccccatcaatattgattttaactttcccaaactggggatttatgttgcaattagacgccaatttgtaggagctctt |
41079006 |
T |
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| Q |
414 |
gtaactagtaaacttttctacatactcggtggttttattctctcaaatcatggaatttctttgctgccatatgctccataaaaacattataaaattgatc |
513 |
Q |
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| T |
41079005 |
gtaactagtaaacttttctacatactcggtggttttattctctcaaatcatggaatttctttgctgccatatgctccataaaaacattataaaattgatc |
41078906 |
T |
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| Q |
514 |
acatttcctatgc |
526 |
Q |
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| T |
41078905 |
acatttcctatgc |
41078893 |
T |
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