View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9583_low_6 (Length: 479)
Name: NF9583_low_6
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9583_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 82 - 467
Target Start/End: Complemental strand, 22517659 - 22517274
Alignment:
| Q |
82 |
tcaattgagaggccaatctaagtcaacttcctcattaccaaaggaaattatggtgaggataccatttgtttattcaagcatcaccaccatagaaatattc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22517659 |
tcaattgagaggccaatctaagtcaactccctccttaccaaaggaaattatggtgaggataccatttgtttattcaagcatcaccaccatagaaaagaac |
22517560 |
T |
|
| Q |
182 |
atctccaacaacaccggtgtgttttattctgcagatgagtattacaatcagatgataaaaaatcatccacaacttatttcaattgaaacaaaccacaaag |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22517559 |
atctccaacaacaccggtgtgttttattctgcagatgagtattacagtcagatgatcaaaaatcatccacaacttgtttcaattgaaacaaaccacaaag |
22517460 |
T |
|
| Q |
282 |
gtgggattaatttgaattctaccaacttctctggattttcaaacatcaaaaacttgtacataactggacaccataatggagccataactttttgggatgc |
381 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22517459 |
gtgggattaacttgaattctaccaacttctctggattttcaaacatcaaaaacttgtacataactggacaccataatggaggcataactttttgggatgc |
22517360 |
T |
|
| Q |
382 |
atcaggccccttcttcatcacagttttgcaattaaagcagcagagtaaaattgatcattctttaagtggtgttcccttgacagtat |
467 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22517359 |
atcaggtcccttcttcatcacaggtttgcaattaaagcagcagagtaaaaatgatcattctttaagtggtgttcccttgacagtat |
22517274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 22517959 - 22517893
Alignment:
| Q |
19 |
tacaatggctccgccgtgggcagcttttgaatggtggagtttttatgatgctcggctatacactcaa |
85 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22517959 |
tacaatggctccgccgtgggcagcatttgaatggtggagtttttatgatgctcggctatacactcaa |
22517893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 37191482 - 37191548
Alignment:
| Q |
19 |
tacaatggctccgccgtgggcagcttttgaatggtggagtttttatgatgctcggctatacactcaa |
85 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37191482 |
tacaatggctccgtcgtgggcagcttttgaatggtggagtttttatgatgctcggctatacactcaa |
37191548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 219 - 424
Target Start/End: Complemental strand, 9710559 - 9710354
Alignment:
| Q |
219 |
agtattacaatcagatgataaaaaatcatccacaacttatttcaattgaaacaaaccacaaaggtgggattaatttgaattctaccaacttctctggatt |
318 |
Q |
| |
|
||||||| | ||| ||||| |||| | ||||||| |||||| ||||||||||||| ||||||| |||| |||| ||| |||| |||||||| ||||||| |
|
|
| T |
9710559 |
agtattatagtcaaatgatcaaaagttatccacagcttattccaattgaaacaaatcacaaagatgggcttaacctgagttctgccaacttcactggatt |
9710460 |
T |
|
| Q |
319 |
ttcaaacatcaaaaacttgtacataactggacaccataatggagccataactttttgggatgcatcaggccccttcttcatcacagttttgcaattaaag |
418 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
9710459 |
ttcaaacattaaaaacttgtacataactggacaccataatggagccataacattttgggatgcatcatgtcccttcttcatcccagttttgcaattaaag |
9710360 |
T |
|
| Q |
419 |
cagcag |
424 |
Q |
| |
|
|||||| |
|
|
| T |
9710359 |
cagcag |
9710354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University