View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9583_low_9 (Length: 382)

Name: NF9583_low_9
Description: NF9583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9583_low_9
NF9583_low_9
[»] chr8 (2 HSPs)
chr8 (62-357)||(71658-71952)
chr8 (306-344)||(36701994-36702032)
[»] chr3 (2 HSPs)
chr3 (305-351)||(45801305-45801350)
chr3 (306-351)||(36182758-36182804)
[»] chr1 (2 HSPs)
chr1 (305-351)||(14613539-14613585)
chr1 (305-366)||(45886863-45886925)
[»] scaffold0007 (2 HSPs)
scaffold0007 (307-351)||(231825-231869)
scaffold0007 (305-351)||(232492-232540)
[»] scaffold0001 (1 HSPs)
scaffold0001 (306-349)||(188444-188487)
[»] chr7 (1 HSPs)
chr7 (306-348)||(33803950-33803993)
[»] chr4 (2 HSPs)
chr4 (304-351)||(9957549-9957596)
chr4 (306-351)||(9958256-9958302)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 62 - 357
Target Start/End: Complemental strand, 71952 - 71658
Alignment:
Q  62 ttccttttcctcttgataaagagaagatcttattatttagtgaatgaacgtgaattgttttagatgtccaacgaagaaaagaaagnnnnnnnnntcaacg 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         ||||||    
T  71952 ttccttttcctcttgataaagagaagatcttattatttagtgaatgaacgtgaattgttttagatgtccaaggaagaaaagaaagaaaaaaaaatcaacg 71853  T
Q  162 ttaatgttgtttaattgcattttcttttcgcaaatttgcaannnnnnnctctttaagatgaggtgcggaaaacaattacttgagaggctctataataaag 261  Q
    |||||||||||||||||||||| ||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  71852 ttaatgttgtttaattgcattt-cttttcgcaaatttgcaatttttttctctttaaggtgaggtgcggaaaacaattacttgagaggctctataataaag 71754  T
Q  262 cccatacaatatagatatataagaaaatttgttgataaacattagaattttgctctcctccagcacaaaacactcgcgccctgtagccatttcaaa 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  71753 cccatacaatatagatatataagaaaatttgttgataaacattagaattttgctctcatccagcacaaaacactcgcgccctgtagccattccaaa 71658  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 36702032 - 36701994
Alignment:
Q  306 gaattttgctctcctccagcacaaaacactcgcgccctg 344  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  36702032 gaattttgctctcccccagcacaaaacactcacgccctg 36701994  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 45801305 - 45801350
Alignment:
Q  305 agaattttgctctcctccagcacaaaacactcgcgccctgtagccat 351  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  45801305 agaattttgctctcc-ccagcacaaaacactcgcgccctgcagccat 45801350  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 36182758 - 36182804
Alignment:
Q  306 gaattttgctct-cctccagcacaaaacactcgcgccctgtagccat 351  Q
    |||||||||||| || || ||||||||||||||||||||||||||||    
T  36182758 gaattttgctcttccccctgcacaaaacactcgcgccctgtagccat 36182804  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 14613539 - 14613585
Alignment:
Q  305 agaattttgctctcctccagcacaaaacactcgcgccctgtagccat 351  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  14613539 agaattttgctctcccccagcacaaaacactcacgccctgcagccat 14613585  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 45886863 - 45886925
Alignment:
Q  305 agaattttgctctcctcc-agcacaaaacactcgcgccctgtagccatttcaaaaacacccct 366  Q
    ||||||||||||| | || |||||||||||||||||||||| || |||||| |||| ||||||    
T  45886863 agaattttgctcttcacccagcacaaaacactcgcgccctgcagacatttcgaaaatacccct 45886925  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 231825 - 231869
Alignment:
Q  307 aattttgctctcctccagcacaaaacactcgcgccctgtagccat 351  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||    
T  231825 aatttggctctcccccagcacaaaacactcgcgccctgcagccat 231869  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 232540 - 232492
Alignment:
Q  305 agaattttgctctcctcc--agcacaaaacactcgcgccctgtagccat 351  Q
    ||||||||||||||| ||  |||||||||||||||||||||| ||||||    
T  232540 agaattttgctctccccccgagcacaaaacactcgcgccctgcagccat 232492  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 188487 - 188444
Alignment:
Q  306 gaattttgctctcctccagcacaaaacactcgcgccctgtagcc 349  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||    
T  188487 gaattctgctctcccccagcacaaaacactcgcgccctgcagcc 188444  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 33803993 - 33803950
Alignment:
Q  306 gaattttgctct-cctccagcacaaaacactcgcgccctgtagc 348  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  33803993 gaattttgctcttcctccagcacaaaacactcgcaccctgtagc 33803950  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 9957549 - 9957596
Alignment:
Q  304 tagaattttgctctcctccagcacaaaacactcgcgccctgtagccat 351  Q
    |||||||| ||||||| ||| |||||||||||||||||||| ||||||    
T  9957549 tagaatttcgctctcccccaacacaaaacactcgcgccctgcagccat 9957596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 9958302 - 9958256
Alignment:
Q  306 gaattttgctctcctcc-agcacaaaacactcgcgccctgtagccat 351  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||    
T  9958302 gaattttgctctccccccagcacaaaacactcgcgccctgcagccat 9958256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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