View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_13 (Length: 358)
Name: NF9584_low_13
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 35554038 - 35553707
Alignment:
| Q |
18 |
ataacctgctatgtaaaattattttactcatacgtcaaataatgtggtgtcacgtcatttaatgtatttggaaacaaatgacttgacatactcattaaag |
117 |
Q |
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| T |
35554038 |
ataacccgctatgtaaaattattttactcatacgtcaaataatgtggtgtcacgtcatttaatgtatttggaaacaaatgacttgtcatacttattaaag |
35553939 |
T |
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| Q |
118 |
cacgtcacgatacatcatttgacacaagtgtaaaataacattacactgacggtgtatacaaattaaactcatatttcaactcatttgggagcgtgcaaga |
217 |
Q |
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| T |
35553938 |
cacatcgcaatacatcatttgacacaagtgtaaaataacattacactgacggtgtatacaaattaaattcatatttcaactcatttggaagcgtgcaaga |
35553839 |
T |
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| Q |
218 |
tcaatgctaacatccaaaactttcatgtatatgaattattgtcactcaaaacacacataaatatgtgatataaatgtatattgacaagcctgaagcctta |
317 |
Q |
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| T |
35553838 |
tcaatgctaacatccaaaactttcatgtatatgaattattgtcactcaaaatacacataaatatgtgatataaatgtatattgacaagcctgaagcctta |
35553739 |
T |
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| Q |
318 |
cagcacaaacacattatttcttaaagaattat |
349 |
Q |
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| T |
35553738 |
cagcacaaacacattatttcttaaagaattat |
35553707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 36113740 - 36113776
Alignment:
| Q |
145 |
gtgtaaaataacattacactgacggtgtatacaaatt |
181 |
Q |
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| T |
36113740 |
gtgtaaaagaaaattacactgacggtgtatacaaatt |
36113776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 9277522 - 9277575
Alignment:
| Q |
28 |
atgtaaaattattttactcatacgtcaaataatgtggtgtcacgtcatttaatg |
81 |
Q |
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| T |
9277522 |
atgtaaaattattttacatattcatctaataatgtggtgtcacgtcaattaatg |
9277575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 55248693 - 55248657
Alignment:
| Q |
148 |
taaaataacattacactgacggtgtatacaaattaaa |
184 |
Q |
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| T |
55248693 |
taaaataattttacactgacggtgtatacaaattaaa |
55248657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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