View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_14 (Length: 358)
Name: NF9584_low_14
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 33173461 - 33173604
Alignment:
| Q |
7 |
cttgtcttgccctggacttacgtgtatggtaagttttcattattttattatattttgctctttaaattttaatgaaagggacaatttagacttattttga |
106 |
Q |
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| T |
33173461 |
cttgtcttgccctggacttacgtgtatggtaagttttcattattttattatattttgctctttaaattttaatgaaagggacaatttagacttattttaa |
33173560 |
T |
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| Q |
107 |
agtaacaataacactttagtattttaagttaaaaatgctggcca |
150 |
Q |
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| T |
33173561 |
agtaacaataacactttagtattttaagttaaaaatgctggcca |
33173604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 229 - 344
Target Start/End: Original strand, 33173679 - 33173794
Alignment:
| Q |
229 |
tcaatacaatatgtacagatattcttaaatttgaagaactaaatcactagtactgttttgtaaacgtaagataccaagttaatcgattttttacaatttt |
328 |
Q |
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| T |
33173679 |
tcaatacaatatgtacagatattcttaaatttgaagaactaaatcactagtactgttttgtaaacgtaagataccaagttaatcgattttttacaatttt |
33173778 |
T |
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| Q |
329 |
gaagaccatgatgtcc |
344 |
Q |
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| T |
33173779 |
gaagaccatgatgtcc |
33173794 |
T |
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