View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_15 (Length: 324)
Name: NF9584_low_15
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 37618337 - 37618601
Alignment:
| Q |
18 |
gattagggtttttgatttcaccagctgtgattgcagaaatggaaaagaacaagacagtgaatgaacgagagcgtttttatttagctgctttgnnnnnnna |
117 |
Q |
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| T |
37618337 |
gattagggtttttgatttcaccagctgtgattgcagaaatggaaaagaacaagacagtgaatgaacgagagcgtttttatttagctactttgttttttta |
37618436 |
T |
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| Q |
118 |
ttacgtgaaaagtgtgtatggactttaggcgggaattattagaatgagtttataatcggctaatttcattttcaaatccgccgttacaaataagttcttg |
217 |
Q |
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| T |
37618437 |
ttacgtgaaaagtgtgtatggactttaggcgggaattattagaatgagtttataatcggctaatttcattttcaaatccgccgttacaaataagttcttg |
37618536 |
T |
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| Q |
218 |
gaaattgggacttttgtatgaattttagcatgactagcttgagatacatgagttagcatgactaa |
282 |
Q |
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| T |
37618537 |
gaaattgggacttttgtatgaattttagcatgactagcttgagatacatgagttagcatgactaa |
37618601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 37618622 - 37618662
Alignment:
| Q |
270 |
ttagcatgactaatgtgcgatatacaacgtgtatttctttc |
310 |
Q |
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| T |
37618622 |
ttagcacgactaatgtgagatatacaacgtgtatttctttc |
37618662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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