View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_17 (Length: 293)
Name: NF9584_low_17
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 866887 - 866613
Alignment:
| Q |
16 |
cttccaccaccgtcacaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcactt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866887 |
cttccaccaccgtcacaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcactt |
866788 |
T |
|
| Q |
116 |
aaccctaatcctttctcaattcactttctttctcacctcctctttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttc |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866787 |
aaccctaatcctttctcaattcactttctttctcacctcctccttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttc |
866688 |
T |
|
| Q |
216 |
ctcaccgcacacactaccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaacccc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
866687 |
ctcaccgcacacactaccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaacccc |
866613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 1228164 - 1227890
Alignment:
| Q |
16 |
cttccaccaccgtcacaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcactt |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228164 |
cttccaccaccgtcacaaccaccttaatcatcggcctcatgatctcctacatcctcgaccttctcaatttcaaacaacctgccttcatctctcttcactt |
1228065 |
T |
|
| Q |
116 |
aaccctaatcctttctcaattcactttctttctcacctcctctttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228064 |
aaccctaatcctttctcaattcactttctttctcacctcctccttttctttatacaccaccttcaattcaaatcttaccttaacaattctctcttctttc |
1227965 |
T |
|
| Q |
216 |
ctcaccgcacacactaccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaacccc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1227964 |
ctcaccgcacacactaccttccttataagtatctggtcttctcttcaattcaaattcctcctcctcgaaaacccc |
1227890 |
T |
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