View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9584_low_19 (Length: 287)

Name: NF9584_low_19
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9584_low_19
NF9584_low_19
[»] chr6 (12 HSPs)
chr6 (124-240)||(18913357-18913473)
chr6 (125-240)||(17378259-17378374)
chr6 (126-240)||(28104363-28104477)
chr6 (123-240)||(19399326-19399442)
chr6 (126-240)||(19953605-19953720)
chr6 (124-240)||(2200882-2200999)
chr6 (124-240)||(22420656-22420773)
chr6 (124-240)||(15688092-15688209)
chr6 (126-236)||(15874993-15875103)
chr6 (140-240)||(16885758-16885858)
chr6 (123-240)||(18927371-18927490)
chr6 (163-236)||(15174696-15174769)
[»] chr4 (17 HSPs)
chr4 (123-240)||(21102845-21102962)
chr4 (123-240)||(14747238-14747355)
chr4 (124-240)||(26013025-26013141)
chr4 (126-238)||(15884652-15884767)
chr4 (126-240)||(15481764-15481878)
chr4 (123-240)||(9922911-9923028)
chr4 (127-236)||(14184645-14184753)
chr4 (123-240)||(11480059-11480176)
chr4 (140-233)||(10696362-10696455)
chr4 (140-233)||(10910131-10910224)
chr4 (161-240)||(15876977-15877056)
chr4 (193-240)||(54604925-54604972)
chr4 (126-236)||(40619367-40619477)
chr4 (140-240)||(12841205-12841305)
chr4 (126-236)||(15007825-15007935)
chr4 (124-174)||(54604874-54604923)
chr4 (130-180)||(14188108-14188158)
[»] scaffold0022 (1 HSPs)
scaffold0022 (123-240)||(54365-54482)
[»] chr7 (23 HSPs)
chr7 (123-240)||(8939740-8939857)
chr7 (123-240)||(14981964-14982081)
chr7 (123-240)||(15112441-15112558)
chr7 (123-240)||(15116013-15116130)
chr7 (123-240)||(14157444-14157561)
chr7 (126-238)||(12556500-12556612)
chr7 (124-240)||(37793854-37793970)
chr7 (126-240)||(46581074-46581188)
chr7 (140-238)||(1490668-1490766)
chr7 (126-240)||(11084680-11084794)
chr7 (123-207)||(10501950-10502034)
chr7 (140-240)||(15719640-15719740)
chr7 (124-238)||(9320774-9320889)
chr7 (129-207)||(16323636-16323714)
chr7 (143-236)||(16551201-16551294)
chr7 (143-236)||(16614368-16614461)
chr7 (128-240)||(16998147-16998259)
chr7 (140-240)||(14416627-14416727)
chr7 (185-238)||(32161242-32161295)
chr7 (126-218)||(11092432-11092524)
chr7 (126-240)||(14272951-14273061)
chr7 (188-236)||(16551149-16551197)
chr7 (188-236)||(16614465-16614513)
[»] chr3 (19 HSPs)
chr3 (123-240)||(24180566-24180683)
chr3 (125-240)||(11914576-11914691)
chr3 (123-240)||(24513386-24513503)
chr3 (123-237)||(35962287-35962401)
chr3 (123-238)||(15061412-15061527)
chr3 (123-238)||(49970584-49970698)
chr3 (123-237)||(3265290-3265403)
chr3 (126-240)||(14965712-14965826)
chr3 (126-240)||(52990168-52990282)
chr3 (123-236)||(36527408-36527520)
chr3 (135-240)||(17692184-17692289)
chr3 (123-240)||(6807925-6808043)
chr3 (162-240)||(13523636-13523714)
chr3 (135-240)||(17685961-17686066)
chr3 (161-240)||(13520907-13520986)
chr3 (163-238)||(21837092-21837167)
chr3 (126-236)||(14871348-14871458)
chr3 (126-236)||(16978799-16978909)
chr3 (126-236)||(22651642-22651752)
[»] chr2 (13 HSPs)
chr2 (123-240)||(34492776-34492893)
chr2 (123-240)||(13101952-13102072)
chr2 (125-240)||(23707974-23708088)
chr2 (125-240)||(24917460-24917575)
chr2 (126-240)||(27472028-27472142)
chr2 (124-240)||(24680860-24680976)
chr2 (124-240)||(24316493-24316609)
chr2 (124-240)||(24670409-24670525)
chr2 (126-236)||(21082280-21082390)
chr2 (126-236)||(27485535-27485645)
chr2 (126-240)||(34874676-34874790)
chr2 (192-240)||(23707912-23707960)
chr2 (126-236)||(18359301-18359411)
[»] scaffold0599 (1 HSPs)
scaffold0599 (125-240)||(6293-6408)
[»] scaffold1508 (1 HSPs)
scaffold1508 (123-240)||(64-181)
[»] scaffold0436 (1 HSPs)
scaffold0436 (123-240)||(7633-7750)
[»] scaffold0014 (2 HSPs)
scaffold0014 (123-240)||(77425-77542)
scaffold0014 (123-240)||(126566-126683)
[»] chr8 (11 HSPs)
chr8 (135-240)||(19879282-19879387)
chr8 (126-240)||(22238481-22238595)
chr8 (124-238)||(14103436-14103550)
chr8 (126-240)||(23409305-23409419)
chr8 (123-185)||(16402148-16402210)
chr8 (163-240)||(32807092-32807169)
chr8 (140-240)||(12576707-12576807)
chr8 (124-236)||(23477877-23477989)
chr8 (126-238)||(26453735-26453847)
chr8 (126-236)||(17461541-17461651)
chr8 (140-238)||(18024790-18024888)
[»] chr1 (14 HSPs)
chr1 (123-240)||(12271117-12271234)
chr1 (123-237)||(22357281-22357395)
chr1 (123-237)||(22358967-22359081)
chr1 (126-240)||(25263470-25263584)
chr1 (124-240)||(8881879-8881996)
chr1 (123-240)||(13513510-13513627)
chr1 (126-236)||(23072572-23072682)
chr1 (126-236)||(10492429-10492539)
chr1 (126-236)||(46198779-46198889)
chr1 (126-236)||(21740227-21740337)
chr1 (126-238)||(27653666-27653775)
chr1 (124-207)||(20315881-20315964)
chr1 (124-205)||(20315664-20315745)
chr1 (126-236)||(51326356-51326466)
[»] scaffold0028 (1 HSPs)
scaffold0028 (126-235)||(63627-63736)
[»] scaffold0577 (1 HSPs)
scaffold0577 (165-240)||(7388-7463)
[»] scaffold0153 (1 HSPs)
scaffold0153 (126-240)||(10213-10327)
[»] chr5 (9 HSPs)
chr5 (126-240)||(41861995-41862109)
chr5 (125-240)||(35852351-35852467)
chr5 (124-236)||(6765369-6765481)
chr5 (124-238)||(24212047-24212162)
chr5 (126-238)||(262723-262835)
chr5 (126-236)||(17010522-17010632)
chr5 (179-240)||(29447632-29447693)
chr5 (126-236)||(27767928-27768038)
chr5 (126-175)||(29447602-29447651)
[»] scaffold0561 (1 HSPs)
scaffold0561 (124-235)||(10177-10282)
[»] scaffold0032 (1 HSPs)
scaffold0032 (126-240)||(66804-66918)
[»] scaffold0020 (1 HSPs)
scaffold0020 (126-240)||(170278-170392)
[»] scaffold0356 (1 HSPs)
scaffold0356 (124-238)||(873-987)
[»] scaffold0076 (1 HSPs)
scaffold0076 (126-240)||(26672-26786)
[»] scaffold0037 (1 HSPs)
scaffold0037 (126-240)||(68874-68988)
[»] scaffold0515 (1 HSPs)
scaffold0515 (126-236)||(3861-3971)
[»] scaffold0335 (1 HSPs)
scaffold0335 (126-240)||(355-469)
[»] scaffold0306 (1 HSPs)
scaffold0306 (126-236)||(3861-3971)
[»] scaffold0017 (1 HSPs)
scaffold0017 (140-233)||(8427-8520)
[»] scaffold0434 (1 HSPs)
scaffold0434 (124-240)||(7404-7520)
[»] scaffold0123 (1 HSPs)
scaffold0123 (123-238)||(103-218)
[»] scaffold0057 (1 HSPs)
scaffold0057 (126-236)||(70933-71043)
[»] scaffold0877 (1 HSPs)
scaffold0877 (135-240)||(3221-3326)
[»] scaffold0025 (1 HSPs)
scaffold0025 (126-238)||(75924-76034)
[»] scaffold0004 (1 HSPs)
scaffold0004 (126-236)||(362278-362388)
[»] scaffold0462 (1 HSPs)
scaffold0462 (124-236)||(7819-7931)
[»] scaffold0175 (1 HSPs)
scaffold0175 (140-240)||(12578-12677)
[»] scaffold0780 (1 HSPs)
scaffold0780 (126-233)||(3798-3905)
[»] scaffold0156 (1 HSPs)
scaffold0156 (126-236)||(15328-15438)
[»] scaffold0104 (4 HSPs)
scaffold0104 (140-238)||(7192-7290)
scaffold0104 (188-238)||(13805-13855)
scaffold0104 (140-238)||(16225-16323)
scaffold0104 (140-238)||(18245-18343)
[»] scaffold1458 (1 HSPs)
scaffold1458 (126-213)||(1693-1780)
[»] scaffold0125 (1 HSPs)
scaffold0125 (126-240)||(2342-2457)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 18913357 - 18913473
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18913357 caacaacatattcatcaatattccatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 18913456  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  18913457 caccacctcttataata 18913473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 17378374 - 17378259
Alignment:
Q  125 aacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 224  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17378374 aacaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 17378275  T
Q  225 accacctcttataata 240  Q
    ||||||||||||||||    
T  17378274 accacctcttataata 17378259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 28104477 - 28104363
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  28104477 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacaactacgtgagagtaca 28104378  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  28104377 ccacctcttataata 28104363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 19399326 - 19399442
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||| ||||||||| || ||  ||||||| ||||||||| || | ||||||||||| |||||||||||||||||||||||||||||    
T  19399326 gcaacaacatattcatcattattccatggtt-gttgttatcaaaaacttcaacgatccgtcaacgacaacatcaacctgacaacacaactacgtgagagt 19399424  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  19399425 acaccacctcttataata 19399442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 19953720 - 19953605
Alignment:
Q  126 acaacatattcatcaatattccatga-tttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 224  Q
    |||||||| |||| |||||||||||  |||||| | | ||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||||||||||    
T  19953720 acaacataatcattaatattccatggctttgtcatcaacaacaacttcaacaattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtac 19953621  T
Q  225 accacctcttataata 240  Q
    ||||||||||||||||    
T  19953620 accacctcttataata 19953605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 2200882 - 2200999
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtcttta-tcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||  |||| ||||||||||| |||||| | | |||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||||    
T  2200882 caacaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagt 2200981  T
Q  223 acaccacctcttataata 240  Q
    ||||||| ||||||||||    
T  2200982 acaccacttcttataata 2200999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 22420656 - 22420773
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtcttta-tcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||  |||| ||||||||||| |||||| | | |||||||||||||| ||||  | |||||||| |||||||||||||||| ||||||||||||    
T  22420656 caacaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacatcaacctgacaacacagctacgtgagagt 22420755  T
Q  223 acaccacctcttataata 240  Q
    |||||||||||| |||||    
T  22420756 acaccacctcttgtaata 22420773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 15688209 - 15688092
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaaca-attcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||| ||||| |||| ||||||||||| |||||| | | |||||||||||||  ||||  ||||||||||||||||||||||| ||||||||||||||||    
T  15688209 caactacataatcattaatattccatggtttgtcatcaacaacaacttcaaccgattcgacaacgacaacgtcaacctgacaatacaactacgtgagagt 15688110  T
Q  223 acaccacctcttataata 240  Q
    |   ||||||||||||||    
T  15688109 atctcacctcttataata 15688092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 15874993 - 15875103
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || ||| |||| |||||| | | ||||||||||||| ||||    ||||||||||||||||| ||| |||||||||||||||||||    
T  15874993 acaacataatcattaacatttcatggtttgtcatcaacaacaacttcaacgattcgatgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 15875092  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  15875093 ccacctcttat 15875103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 16885858 - 16885758
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataat 239  Q
    |||||||| || |||||| | | ||||||||||||||||||  | ||||||||||||| ||||||| |||||||||| ||| || |||||||||||||||    
T  16885858 aatattccttgttttgtcatcaacaacaacttcaacaattcgacgacgacaacgtcaatctgacaatacaactacgtaagattaaaccacctcttataat 16885759  T
Q  240 a 240  Q
    |    
T  16885758 a 16885758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 18927371 - 18927490
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgaga-- 220  Q
    ||||||||||| || | ||||||   || |||||| | | ||||||||||||| ||||  | |||||||||||||| |||||||||| ||||||||||      
T  18927371 gcaacaacataatccttaatattatgtggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgacaacacagctacgtgagagt 18927470  T
Q  221 gtacaccacctcttataata 240  Q
    ||||||||||||||||||||    
T  18927471 gtacaccacctcttataata 18927490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 15174769 - 15174696
Alignment:
Q  163 caacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttat 236  Q
    ||||||||||||| ||||  | |||| |||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  15174769 caacaacttcaacgattcgacgacgataacgtcaacctgtcaatacaactacatgagagtacaccatctcttat 15174696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 21102962 - 21102845
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21102962 gcaacaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 21102863  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  21102862 acaccacctcttataata 21102845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 14747355 - 14747238
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  14747355 gcaacaacatattcatcaatattccatggtttgtctttatcaacaacttcaaagattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 14747256  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  14747255 acaccacctcttataata 14747238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 26013025 - 26013141
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26013025 caacaacataatcattaatattccatggtttatctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 26013124  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  26013125 caccacctcttataata 26013141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 15884767 - 15884652
Alignment:
Q  126 acaacatattcatca---atattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||   ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15884767 acaacatattcatcattaatatttcatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacaaaaccacgtgagagt 15884668  T
Q  223 acaccacctcttataa 238  Q
    ||||||||||||||||    
T  15884667 acaccacctcttataa 15884652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 15481878 - 15481764
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||| |    
T  15481878 acaacataatcattaatattccatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaaaacagctacataagagtata 15481779  T
Q  226 ccacctcttataata 240  Q
     ||||||||||||||    
T  15481778 tcacctcttataata 15481764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 9922911 - 9923028
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| |||||| |||| |||||| | | ||||||||||||| ||||  |||||||||||||||| |||||||||| ||||||||||||    
T  9922911 gcaacaacataatcattaatatttcatggtttgtcatcaacaacaacttcaacgattcgacaacgacaacgtcaacttgacaacacagctacgtgagagt 9923010  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  9923011 acaccacctcttataata 9923028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 14184645 - 14184753
Alignment:
Q  127 caacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacac 226  Q
    |||||||||||||||||| ||||  |||||  ||||||||||||||||| ||||  || | |||||||||||||||||||||| ||||||||||||||||    
T  14184645 caacatattcatcaatatcccatagtttgttattatcaacaacttcaacgattcgaca-caacaacgtcaacctgacaacacagctacgtgagagtacac 14184743  T
Q  227 cacctcttat 236  Q
    ||||||||||    
T  14184744 cacctcttat 14184753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 11480176 - 11480059
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| || | |||||| |||| |||||| | | ||||||||||||| |||   | |||||||||||||| |||||||||| ||||||||||||    
T  11480176 gcaacaacataatccttaatatttcatggtttgtcatcaacaacaacttcaacgatttgacgacgacaacgtcaacttgacaacacagctacgtgagagt 11480077  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  11480076 acaccacctcttataata 11480059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 10696455 - 10696362
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctct 233  Q
    ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  10696455 aatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctct 10696362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 10910224 - 10910131
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctct 233  Q
    ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  10910224 aatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctct 10910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 15876977 - 15877056
Alignment:
Q  161 atcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    ||||||||||||||| ||||  | |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  15876977 atcaacaacttcaacgattcgacgacgacaacgtcaacttgacaacacagctacgtgagagtacgccacctcttataata 15877056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 54604925 - 54604972
Alignment:
Q  193 gtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54604925 gtcaacctgacaacacaactacgtgagagtacaccacctcttataata 54604972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 40619367 - 40619477
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||||| | ||||||||||||  ||||    | ||||||||||||||| ||| |||||||||||||||||||    
T  40619367 acaacatgatcattaacattccatggtttgtcttcaacaacaacttcaatgattcgaagatgacaacgtcaacctgtcaatacaactacgtgagagtaca 40619466  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  40619467 ccacctcttat 40619477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 12841205 - 12841305
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataat 239  Q
    ||||||||||| |||||| | | ||||||||||||  ||||  | |||||||||||||  ||| || ||||||||||||||||| |||||||||||||||    
T  12841205 aatattccatggtttgtcatcaacaacaacttcaatgattcgacgacgacaacgtcaatatgaaaatacaactacgtgagagtataccacctcttataat 12841304  T
Q  240 a 240  Q
    |    
T  12841305 a 12841305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 15007825 - 15007935
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||| ||||||||| ||||  | | || |||||||||||| ||| |||||||||||||||||||    
T  15007825 acaacatgatcattaacattccatggtttgtcatcaacaaaaacttcaacgattcgacgatgagaacgtcaacctgtcaatacaactacgtgagagtaca 15007924  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  15007925 ccacctcttat 15007935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 54604874 - 54604923
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaa 174  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  54604874 caacaacatattcatcaatattccatggtttgtcttta-caacaacttcaa 54604923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 14188108 - 14188158
Alignment:
Q  130 catattcatcaatattccatgatttgtctttatcaacaacttcaacaattc 180  Q
    ||||||||||||||| ||||| |||||  ||||||||||||||||| ||||    
T  14188108 catattcatcaatatcccatggtttgttattatcaacaacttcaacgattc 14188158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 54482 - 54365
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  54482 gcaacaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaaaacaactacgtgagagt 54383  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  54382 acaccacctcttataata 54365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 8939740 - 8939857
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8939740 gcaacaacatattcatcaatattccatggtttgtctgtatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 8939839  T
Q  223 acaccacctcttataata 240  Q
    |||||||||| |||||||    
T  8939840 acaccacctcgtataata 8939857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 14982081 - 14981964
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  14982081 gcaacaacataatcattaatattccatggtttatctttatcaacaacttcaacaattcatcaacgataacgtcaacctgacaacacaacgacgtgagagt 14981982  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  14981981 acaccacctcttataata 14981964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 15112441 - 15112558
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |    
T  15112441 gcaacaacataatcattaatattctatgttttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacaccactacgtgagaat 15112540  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  15112541 acaccacctcttataata 15112558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 15116013 - 15116130
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |    
T  15116013 gcaacaacataatcattaatatttcatgttttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacaccactacatgagaat 15116112  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  15116113 acaccacctcttataata 15116130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 14157561 - 14157444
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||| |||||||||||| | ||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  14157561 gcaacaacataatcattaatatcccatgatttgtcatcatcaacaacttcaacgattcgacaacgacaacgtcaacctgacaacacaactacgtgagagt 14157462  T
Q  223 acaccacctcttataata 240  Q
    ||||||| ||||||||||    
T  14157461 acaccacatcttataata 14157444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 12556500 - 12556612
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| |||||| |||| |||||| | | ||||||||||||| ||||| | ||||||||||||||||||||| ||| |||||||||||||||    
T  12556500 acaacataatcattaatatttcatggtttgtcatcaacaacaacttcaacgattcaactacgacaacgtcaacctgacaatacagctacgtgagagtaca 12556599  T
Q  226 ccacctcttataa 238  Q
    |||||||||||||    
T  12556600 ccacctcttataa 12556612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 37793970 - 37793854
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| |||||| |||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||||||| ||| |||||||||||||    
T  37793970 caacaacataatcattaatattacatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacagctacgtgagagta 37793871  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  37793870 caccacctcttataata 37793854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 46581188 - 46581074
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||| | ||||||||| ||||||||||| ||| |||||||||| ||||    
T  46581188 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgccaacctgacaatacagctacgtgagaataca 46581089  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  46581088 ccacctcttataata 46581074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 1490766 - 1490668
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  1490766 aatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacacctacgtgagagtacaccacctcttataa 1490668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 11084680 - 11084794
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| | || |||| |||||| |||||| | | ||| ||||||||| ||||| | ||||||||||||||||||||| ||| |||||||||||||||    
T  11084680 acaacataataattaatactccatggtttgtcatcaacaagaacttcaacgattcaacgacgacaacgtcaacctgacaagacagctacgtgagagtaca 11084779  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  11084780 ccacctcttataata 11084794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 10502034 - 10501950
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaaca 207  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||| |||||||||| |||||||| ||||||    
T  10502034 gcaacaacatattcattaatattccatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacctaacaaca 10501950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 15719640 - 15719740
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataat 239  Q
    ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  15719640 aatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaaccacgtaagagtacaccacctcttataat 15719739  T
Q  240 a 240  Q
    |    
T  15719740 a 15719740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 9320889 - 9320774
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtcttta-tcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||  |||| ||||||||||| |||||| | | |||||||||||||| ||||  | ||||||| ||||||||||||||||| |||||| |||||    
T  9320889 caacaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaatgtcaacctgacaacacagctacgtaagagt 9320790  T
Q  223 acaccacctcttataa 238  Q
    ||||||||||||||||    
T  9320789 acaccacctcttataa 9320774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 16323636 - 16323714
Alignment:
Q  129 acatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaaca 207  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  16323636 acatattcattaatattccatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacctgacaaca 16323714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 16551294 - 16551201
Alignment:
Q  143 attccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttat 236  Q
    |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  16551294 attccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtacaccacctcttat 16551201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 16614368 - 16614461
Alignment:
Q  143 attccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttat 236  Q
    |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  16614368 attccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtacaccacctcttat 16614461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 16998147 - 16998259
Alignment:
Q  128 aacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacacc 227  Q
    |||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||  | | ||||||||||||||||||| ||| ||| |||||||||||||    
T  16998147 aacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgacaatacagctatgtgagagtacacc 16998246  T
Q  228 acctcttataata 240  Q
    |||| ||||||||    
T  16998247 accttttataata 16998259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 14416727 - 14416627
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataat 239  Q
    ||||||||||| |||||| |   ||||||||||||  ||||  | ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  14416727 aatattccatgttttgtcatctacaacaacttcaaggattcgacgacgacaacgtcaacctgacattacaactacgtaagagtacaccacctcttataat 14416628  T
Q  240 a 240  Q
    |    
T  14416627 a 14416627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 32161295 - 32161242
Alignment:
Q  185 acgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  32161295 acgacaacttcaacctgacaacacagctacatgagagtacaccacctcttataa 32161242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 11092432 - 11092524
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtga 218  Q
    |||||||| | || |||| |||||| |||||| | | || |||||||||| ||||| | ||||||||||||||||||||| ||| ||||||||    
T  11092432 acaacataataattaataatccatggtttgtcatcaacagcaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtga 11092524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 14272951 - 14273061
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| |||   ||||||||||| ||||  | | |||||||||||||| ||||  ||  |||||||||||| |    
T  14272951 acaacataatcattaatattccatggtttgtcatta---acaacttcaacgattcgacgatgacaacgtcaaccttacaat-cagttacgtgagagtata 14273046  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  14273047 ccacctcttataata 14273061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 16551197 - 16551149
Alignment:
Q  188 acaacgtcaacctgacaacacaactacgtgagagtacaccacctcttat 236  Q
    |||||| |||| || ||| ||||||||||||||||||||||||||||||    
T  16551197 acaacgacaacatgtcaatacaactacgtgagagtacaccacctcttat 16551149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 16614465 - 16614513
Alignment:
Q  188 acaacgtcaacctgacaacacaactacgtgagagtacaccacctcttat 236  Q
    |||||| |||| || ||| ||||||||||||||||||||||||||||||    
T  16614465 acaacgacaacatgtcaatacaactacgtgagagtacaccacctcttat 16614513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 24180683 - 24180566
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24180683 gcaacaacataatcattaatatttcatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 24180584  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  24180583 acaccacctcttataata 24180566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 11914691 - 11914576
Alignment:
Q  125 aacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 224  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  11914691 aacatcatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacaacaacgtcaacctgacaacacaactacgtgagagtac 11914592  T
Q  225 accacctcttataata 240  Q
    ||||||||||||||||    
T  11914591 accacctcttataata 11914576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 24513386 - 24513503
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24513386 gcaacaacatattcatcaatattcagtggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 24513485  T
Q  223 acaccacctcttataata 240  Q
    ||||||||| ||||||||    
T  24513486 acaccaccttttataata 24513503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 35962401 - 35962287
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||  |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35962401 gcaacaacatattcaataatatttcatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaagctgacaacacaactacgtgagagt 35962302  T
Q  223 acaccacctcttata 237  Q
    |||||||||||||||    
T  35962301 acaccacctcttata 35962287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 15061412 - 15061527
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||| ||||||||| |||||| | | ||||||||||||| ||||| | ||||||||||| ||||||||| ||| ||||||||||||    
T  15061412 gcaacaacatattcatcattattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtctacctgacaatacagctacgtgagagt 15061511  T
Q  223 acaccacctcttataa 238  Q
    ||||||||||||||||    
T  15061512 acaccacctcttataa 15061527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 49970698 - 49970584
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||| ||||||||| || ||  ||||||||||||||||| || | ||||| ||||| ||||||||||||||||||||| |||||||    
T  49970698 gcaacaacatattcatcattattccatggtt-gttattatcaacaacttcaacgatccgtcaacaacaacatcaacctgacaacacaactacatgagagt 49970600  T
Q  223 acaccacctcttataa 238  Q
    ||||||||||||||||    
T  49970599 acaccacctcttataa 49970584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 3265403 - 3265290
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||| ||| |||||||||| ||||| |||||| | ||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||||||||    
T  3265403 gcaacaatataatcatcaatatcccatggtttgtcatcatcaacaacttcaacgattcgaca-cgacaacgtcaacctgacaacacagctacgtgagagt 3265305  T
Q  223 acaccacctcttata 237  Q
    |||||||||||||||    
T  3265304 acaccacctcttata 3265290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 14965712 - 14965826
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||| | ||||||||||||||||||||| |||  ||||||||||||||    
T  14965712 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagttacgtgagagtaca 14965811  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  14965812 ccacctcttataata 14965826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 52990282 - 52990168
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||| | |||||||||||||||| |||| ||| |||||||||||||||    
T  52990282 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaaccttacaatacagctacgtgagagtaca 52990183  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  52990182 ccacctcttataata 52990168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 36527408 - 36527520
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||| ||| |||||||||| ||||| |||||| | ||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||||||||    
T  36527408 gcaacaatataatcatcaatatcccatggtttgtcatcatcaacaacttcaacgattcgaca-cgacaacgtcaacctgacaacacagctacgtgagagt 36527506  T
Q  223 acaccacctcttat 236  Q
    || |||||||||||    
T  36527507 acgccacctcttat 36527520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 17692289 - 17692184
Alignment:
Q  135 tcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctctt 234  Q
    |||| ||||||||||| |||||| | | ||| ||||||||| | ||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  17692289 tcattaatattccatggtttgtcatcaacaataacttcaacgaatcaacgacgacaacgtcaacctgacaatacagctacgtgagagtacaccacctctt 17692190  T
Q  235 ataata 240  Q
    ||||||    
T  17692189 ataata 17692184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 6807925 - 6808043
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtcttta-tcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagag 221  Q
    ||||||||||  |||| |||||| |||| |||||| | | |||||||||||||| ||||  | |||||||||||||| |||||||||| ||||||||||     
T  6807925 gcaacaacatgatcattaatatttcatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacatgacaacacagctacgtgagaa 6808024  T
Q  222 tacaccacctcttataata 240  Q
    |||||||||||||||||||    
T  6808025 tacaccacctcttataata 6808043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 13523714 - 13523636
Alignment:
Q  162 tcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    |||||||||||||| ||||  | ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  13523714 tcaacaacttcaactattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctcttataata 13523636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 17686066 - 17685961
Alignment:
Q  135 tcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctctt 234  Q
    |||| |||||| |||| |||||| | | ||||||||||||| ||||  | |||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  17686066 tcattaatatttcatggtttgtcatcaacaacaacttcaacgattcgacgacgacatcgtcaacctgacaatacagctacgtgagagtacaccacctctt 17685967  T
Q  235 ataata 240  Q
    ||||||    
T  17685966 ataata 17685961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 13520986 - 13520907
Alignment:
Q  161 atcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    ||||||||||||||| ||||  | ||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  13520986 atcaacaacttcaacgattcgacgacgacaacgtcaatctgacaacacaactacgtatgagtacaccacctcttataata 13520907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 21837092 - 21837167
Alignment:
Q  163 caacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    ||||||||||||||||||  | | ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  21837092 caacaacttcaacaattcgacgatgacaacgtcaacctgacaatacaactacatgagagtacaccacctcttataa 21837167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 14871458 - 14871348
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||||||||||||| ||||  | |||||||||||||| || ||| |||||||||||||||||||    
T  14871458 acaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgagagtaca 14871359  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  14871358 ccacctcttat 14871348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 16978799 - 16978909
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||||||||||||| ||||  | || |||||||||||||| ||| |||||||||||||||||||    
T  16978799 acaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgactacaacgtcaacctgtcaatacaactacgtgagagtaca 16978898  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  16978899 ccacctcttat 16978909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 22651642 - 22651752
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  22651642 acaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 22651741  T
Q  226 ccacctcttat 236  Q
    ||| |||||||    
T  22651742 ccatctcttat 22651752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 34492893 - 34492776
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34492893 gcaacaacataatcattaatattccatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcatcctgacaacacaactacgtgagagt 34492794  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  34492793 acaccacctcttataata 34492776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 13102072 - 13101952
Alignment:
Q  123 gcaacaacatattcatca---atattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgag 219  Q
    ||||||||||||||||||   ||||| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  13102072 gcaacaacatattcatcattaatatttcatgttttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacctgacaacacaactacgtgag 13101973  T
Q  220 agtacaccacctcttataata 240  Q
    |||||||||||||||||||||    
T  13101972 agtacaccacctcttataata 13101952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 23708088 - 23707974
Alignment:
Q  125 aacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  23708088 aacaacatattcatcaatattacatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacagctacgtga-agtac 23707990  T
Q  225 accacctcttataata 240  Q
    || |||||||||||||    
T  23707989 acaacctcttataata 23707974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 24917460 - 24917575
Alignment:
Q  125 aacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 224  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  24917460 aacaacatattcatcaatattccatggtttgtctttatcaccaacttcaatgattcatcaacgacaacgtcaacctgacaatacaactacgtgagtgtac 24917559  T
Q  225 accacctcttataata 240  Q
    | ||||||||||||||    
T  24917560 atcacctcttataata 24917575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 27472028 - 27472142
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||| | |||||||| |||||||||||| ||| |||||||||||||||    
T  27472028 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacatcaacctgacaatacagctacgtgagagtaca 27472127  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  27472128 ccacctcttataata 27472142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 24680860 - 24680976
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||| ||||||||||||| ||| |||||||||||||    
T  24680860 caacaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaaagtcaacctgacaatacagctacgtgagagta 24680959  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  24680960 caccacctcttataata 24680976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 24316609 - 24316493
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| ||||||||||  ||| || | | ||||||||||||| ||||  | ||||||||||||||||||||| ||| |||||||||||||    
T  24316609 caacaacataatcattaatattccattgtttttcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacagctacgtgagagta 24316510  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  24316509 caccacctcttataata 24316493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 24670409 - 24670525
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||    ||||||| ||||||||||||| ||| |||||||||||||    
T  24670409 caacaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgatgacgacaatgtcaacctgacaatacagctacgtgagagta 24670508  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  24670509 caccacctcttataata 24670525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 21082390 - 21082280
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  21082390 acaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 21082291  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  21082290 ccacctcttat 21082280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 27485645 - 27485535
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||  | | ||||||||||||||| ||| |||||||||||||||||||    
T  27485645 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgtcaatacaactacgtgagagtaca 27485546  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  27485545 ccacctcttat 27485535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 34874790 - 34874676
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||  ||| |||||| | | ||||||||||||| ||||| | |||||||||||||||||||||  || ||||||||||||| |    
T  34874790 acaacataatcattaatattatatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatccagctacgtgagagtata 34874691  T
Q  226 ccacctcttataata 240  Q
    |||| ||||||||||    
T  34874690 ccacatcttataata 34874676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 23707960 - 23707912
Alignment:
Q  192 cgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23707960 cgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 23707912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 18359411 - 18359301
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || ||| |||| |||||| | | ||||||||||||| ||||    |||||||||| |||||| ||| |||||||||||||| ||||    
T  18359411 acaacataatcattaacatttcatggtttgtcatcaacaacaacttcaacgattcgatgacgacaacgttaacctgtcaatacaactacgtgagattaca 18359312  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  18359311 ccacctcttat 18359301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 6408 - 6293
Alignment:
Q  125 aacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 224  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  6408 aacatcatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacaacaacgtcaacctgacaacacaactacgtgagagtac 6309  T
Q  225 accacctcttataata 240  Q
    ||||||||||||||||    
T  6308 accacctcttataata 6293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1508 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold1508
Description:

Target: scaffold1508; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 181 - 64
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  181 gcaacaacataatcattaatattcaatggtttgtctttatcaacaacttcaacaattcatcaacgacaatgtcaacttgacaacacaactacgtgagagt 82  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  81 acaccacctcttataata 64  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 7633 - 7750
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  7633 gcaacaacataatcattaatattcaatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactatgttagagt 7732  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  7733 acaccacctcttataata 7750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 77425 - 77542
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||||||||||||  |||||| |||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  77425 gcaacaacatattcatcaatattccatagtttgtcattatcaacaatttcaacgattcgtcaacgacaacgtcaacctgacaacacagctacgtgagagt 77524  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  77525 acaccacctcttataata 77542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 126566 - 126683
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||| ||||| |||||| | ||||||||||||||| ||||  |||||||||| |||||||||||||||| ||||||||||||    
T  126566 gcaacaacataatcattaatatcccatggtttgtcatcatcaacaacttcaacgattcgacaacgacaacatcaacctgacaacacagctacgtgagagt 126665  T
Q  223 acaccacctcttataata 240  Q
    ||||||| ||||||||||    
T  126666 acaccacatcttataata 126683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 19879282 - 19879387
Alignment:
Q  135 tcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctctt 234  Q
    |||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19879282 tcattaatatttcgtggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctctt 19879381  T
Q  235 ataata 240  Q
    ||||||    
T  19879382 ataata 19879387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 22238595 - 22238481
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||| ||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||| |    
T  22238595 acaacataatcattaatattccatggtttgtcatgaacaaaaacttcaacgattcaacgacgacaacgtcaacctgacaatacaactacgtgagagtata 22238496  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  22238495 ccacctcttataata 22238481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 14103550 - 14103436
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    ||||| |||| ||||||| |||||||| |||||| | | ||||||||||||| ||||  |||||||||||| ||||||  || |||||||||||||||||    
T  14103550 caacagcataatcatcaacattccatggtttgtcatcaacaacaacttcaacgattcgacaacgacaacgtaaacctgttaatacaactacgtgagagta 14103451  T
Q  224 caccacctcttataa 238  Q
    |||||||||||||||    
T  14103450 caccacctcttataa 14103436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 23409305 - 23409419
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| ||| || | | ||||||||||||| ||||| | |||||| ||||||||| |||| ||| |||||||||||||||    
T  23409305 acaacataatcattaatattccatggtttatcatcaacaacaacttcaacgattcaacgacgacatcgtcaacctaacaatacagctacgtgagagtaca 23409404  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  23409405 ccacctcttataata 23409419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 16402210 - 16402148
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaa 185  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  16402210 gcaacaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaa 16402148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 32807092 - 32807169
Alignment:
Q  163 caacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    ||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  32807092 caacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagtacaccacatcttataata 32807169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 12576707 - 12576807
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataat 239  Q
    ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  12576707 aatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaatgtcaacctgacaatacagctacgtgagagtgcaccacctcttataat 12576806  T
Q  240 a 240  Q
    |    
T  12576807 a 12576807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 23477877 - 23477989
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||    ||||||||||||||||| ||| ||||||||||||||||     
T  23477877 caacaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgaggacgacaacgtcaacctgtcaatacaactacgtgagagtg 23477976  T
Q  224 caccacctcttat 236  Q
    |||||||||||||    
T  23477977 caccacctcttat 23477989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 26453735 - 26453847
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||||||||||||| | ||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  26453735 acaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgaatcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 26453834  T
Q  226 ccacctcttataa 238  Q
    |||||||||||||    
T  26453835 ccacctcttataa 26453847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 17461651 - 17461541
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||  |||||| |||  |||||| ||| ||||||||||||| ||||  | | ||||||||||||||||||| ||| |||||||||||||||    
T  17461651 acaacataatcagtaatatttcattgtttgtcattaacaacaacttcaacgattcgacgatgacaacgtcaacctgacaatacagctacgtgagagtaca 17461552  T
Q  226 ccacctcttat 236  Q
    | |||||||||    
T  17461551 ctacctcttat 17461541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 18024888 - 18024790
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    ||||||||||| |||||| |   ||||||||||||  ||||  | ||||||||||||||||||||  |||||||||| |||||| |||| |||||||||    
T  18024888 aatattccatgttttgtcatctacaacaacttcaaggattcgacgacgacaacgtcaacctgacattacaactacgtaagagtataccatctcttataa 18024790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 12271117 - 12271234
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| |    
T  12271117 gcaacaacataatcattaatattccatgttttgtctttatcaacaacttcaacggttcatcaacgacaacgtcaacctgacaacaccactacgtgagaat 12271216  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  12271217 acaccacctcttataata 12271234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 22357281 - 22357395
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||| | ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||    
T  22357281 gcaacaacataatcattaatatccaatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacctgacaatacaactacgtgagagt 22357380  T
Q  223 acaccacctcttata 237  Q
    |||||||||||||||    
T  22357381 acaccacctcttata 22357395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 22358967 - 22359081
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| ||||| | ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||    
T  22358967 gcaacaacataatcattaatatccaatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacctgacaatacaactacgtgagagt 22359066  T
Q  223 acaccacctcttata 237  Q
    |||||||||||||||    
T  22359067 acaccacctcttata 22359081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 25263584 - 25263470
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||  | | ||||||||||||| ||||| | ||||||||||||||||||||| ||| |||||||||||||||    
T  25263584 acaacataatcattaatattccatggtttgtaatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtaca 25263485  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  25263484 ccacctcttataata 25263470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 8881879 - 8881996
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtcttta-tcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||  |||| ||||||||||| |||||| | | |||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||||    
T  8881879 caacaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagt 8881978  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  8881979 acaccacctcttataata 8881996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 13513510 - 13513627
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||||||||||| ||||||||| |||||| | | ||||||||||||| ||||| |||||||| |||||| ||||||| | | |||| |||||||    
T  13513510 gcaacaacatattcatcattattccatggtttgtcatcaacaacaacttcaacgattcaacaacgacagcgtcaatctgacaatatagctacatgagagt 13513609  T
Q  223 acaccacctcttataata 240  Q
    ||||||||||||||||||    
T  13513610 acaccacctcttataata 13513627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 23072572 - 23072682
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||| | | ||||||||||||||||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  23072572 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacaattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 23072671  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  23072672 ccacctcttat 23072682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 10492539 - 10492429
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||| | |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  10492539 acaacaaaatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 10492440  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  10492439 ccacctcttat 10492429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 46198889 - 46198779
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||  | | ||||||||||||| ||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  46198889 acaacataatcattaacattccatggtttgttatcaccaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 46198790  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  46198789 ccacctcttat 46198779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 21740337 - 21740227
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||  |||||| | | ||||||||||||| ||||  | |||||||||||||| || ||| |||||||||||||||||||    
T  21740337 acaacataatcattaacattccattgtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgagagtaca 21740238  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  21740237 ccacctcttat 21740227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 27653775 - 27653666
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| ||||||   ||||||||||||||  ||||  | | ||||||||||||||| ||| ||| |||||||||||||||    
T  27653775 acaacataatcattaatattccatggtttgtc---atcaacaacttcaaggattcgacgatgacaacgtcaacctgtcaatacagctacgtgagagtaca 27653679  T
Q  226 ccacctcttataa 238  Q
    |||||||||||||    
T  27653678 ccacctcttataa 27653666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 20315881 - 20315964
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaaca 207  Q
    ||||||||||||||| |||| |||||| |||||| || |||||||||||||| |||| ||| |||||| |||||||||||||||    
T  20315881 caacaacatattcattaatagtccatggtttgtcattttcaacaacttcaacgattcgtcatcgacaatgtcaacctgacaaca 20315964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 20315664 - 20315745
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaa 205  Q
    ||||||||||||||| |||| |||||| |||||| ||||||||||||||||| |||| |||||||||| || ||| ||||||    
T  20315664 caacaacatattcattaatagtccatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtaaacttgacaa 20315745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 51326356 - 51326466
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||| | || ||| | | ||||||||||||| ||||  | || || ||||||||||| ||| |||||||||||| ||||||    
T  51326356 acaacataatcattaacattccagggttggtcatcaacaacaacttcaacgattcgacgacaacnacgtcaacctgtcaatacaactacgtgaaagtaca 51326455  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  51326456 ccacctcttat 51326466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 63627 - 63736
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  63627 acaacatgatcattaacatttcatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 63726  T
Q  226 ccacctctta 235  Q
    ||||| ||||    
T  63727 ccaccactta 63736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 7388 - 7463
Alignment:
Q  165 acaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7388 acaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacatcacctcttataata 7463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 10213 - 10327
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||| | ||||||||||||||||||||| ||| |||||||||||||||    
T  10213 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtaca 10312  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  10313 ccacctcttataata 10327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 41862109 - 41861995
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||||||||||| |||| ||||||||||    
T  41862109 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacatgagagtaca 41862010  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  41862009 ccacctcttataata 41861995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 35852351 - 35852467
Alignment:
Q  125 aacaacatattcatcaatattccatgatttgtc-tttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    ||||||||  |||| ||||||||||||||||||    ||||||||||||||| ||||  | ||||||||||||||||||||||||| |||||||||||||    
T  35852351 aacaacatgatcattaatattccatgatttgtcaccaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagta 35852450  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  35852451 caccacctcttataata 35852467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 6765369 - 6765481
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||  | |||||||||||||| || ||| |||||||||||||| ||    
T  6765369 caacaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgagatta 6765468  T
Q  224 caccacctcttat 236  Q
    |||||||||||||    
T  6765469 caccacctcttat 6765481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 24212047 - 24212162
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtcttta-tcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    |||||||||  |||| |||||| |||| |||||| | | |||||||||||||| ||||  | |||||||||||||||||||||||||  ||||| |||||    
T  24212047 caacaacatgatcattaatatttcatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagttacgtaagagt 24212146  T
Q  223 acaccacctcttataa 238  Q
    ||||||||||||||||    
T  24212147 acaccacctcttataa 24212162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 262723 - 262835
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||| | | |||| |||||||| ||||  | |||||||||||||| || ||| |||||||||||| ||||||    
T  262723 acaacataatcattaacattccatggtttgtcatcaacaaccacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgaaagtaca 262822  T
Q  226 ccacctcttataa 238  Q
    |||||||||||||    
T  262823 ccacctcttataa 262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 17010522 - 17010632
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||||||||||||| ||||  | | ||||||||||||||| ||| ||||||| |||||||||||    
T  17010522 acaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgtcaatacaactatgtgagagtaca 17010621  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  17010622 ccacctcttat 17010632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 29447632 - 29447693
Alignment:
Q  179 tcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataata 240  Q
    |||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||||    
T  29447632 tcatcatcgacaacttcaacctgacaacacagctacgtgaaagtacaccacctcttataata 29447693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 27768038 - 27767928
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||  |||| || |||||||| |||||| | | ||||||||| ||| ||||  | |||||||||| |||||| ||| |||||||||||||||||||    
T  27768038 acaacatgatcattaacattccatggtttgtcatcaacaacaactttaacgattcgacgacgacaacgttaacctgtcaatacaactacgtgagagtaca 27767939  T
Q  226 ccacctcttat 236  Q
     ||||||||||    
T  27767938 tcacctcttat 27767928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 29447602 - 29447651
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaac 175  Q
    |||||||| |||| |||||||||||||||||| | ||| |||||||||||    
T  29447602 acaacatactcattaatattccatgatttgtcatcatcgacaacttcaac 29447651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 10177 - 10282
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| ||||||||||| |||||| ||||||||||||||||| ||||      |||||||||||||||||||||||||||||||||||||    
T  10177 caacaacataatcattaatattccatggtttgtcattatcaacaacttcaacgattc------gacaacgtcaacctgacaacacaactacgtgagagta 10270  T
Q  224 caccacctctta 235  Q
    ||||||| ||||    
T  10271 caccaccactta 10282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 66804 - 66918
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| ||||||||||| |||| |||||| | | || |||||||||| ||||| | | ||||||||||||||||||| ||| |||||||||||||||    
T  66804 acaacataatcatcaatatttcatggtttgtcatcaacatcaacttcaacgattcaacgatgacaacgtcaacctgacaatacagctacgtgagagtaca 66903  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  66904 ccacctcttataata 66918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 170392 - 170278
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||| ||| |||| ||||||||||| |||||  | | ||||||||||||| ||||| | ||||||||||||||||||||| ||| |||||||||||||||    
T  170392 acaaaataatcattaatattccatggtttgtaatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtaca 170293  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  170292 ccacctcttataata 170278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 987 - 873
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    ||||| |||| ||||||| |||||||| |||||| | | ||||||||||||| ||||  |||||||||||| ||||||  || |||||||||||||||||    
T  987 caacagcataatcatcaacattccatggtttgtcatcaacaacaacttcaacgattcgacaacgacaacgtaaacctgttaatacaactacgtgagagta 888  T
Q  224 caccacctcttataa 238  Q
    |||||||||||||||    
T  887 caccacctcttataa 873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 26786 - 26672
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||  | | ||||||||||||||||||| ||| ||||| |||||||||    
T  26786 acaacataatcattaatattccatgttttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgacaatacacctacgagagagtaca 26687  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  26686 ccacctcttataata 26672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 68874 - 68988
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| |||||| | | ||||||||||||| ||||| | ||||||||||||||||||| | ||| |||| ||||||||||    
T  68874 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacgatacagctacatgagagtaca 68973  T
Q  226 ccacctcttataata 240  Q
    |||||| ||||||||    
T  68974 ccaccttttataata 68988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 3861 - 3971
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  3861 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 3960  T
Q  226 ccacctcttat 236  Q
    ||| |||||||    
T  3961 ccatctcttat 3971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 355 - 469
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||  ||| ||||||||||||||||| |    
T  355 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctttcaatacaactacgtgagagtata 454  T
Q  226 ccacctcttataata 240  Q
    |||||||||||||||    
T  455 ccacctcttataata 469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 3861 - 3971
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  3861 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 3960  T
Q  226 ccacctcttat 236  Q
    ||| |||||||    
T  3961 ccatctcttat 3971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 8520 - 8427
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctct 233  Q
    ||||||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  8520 aatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctct 8427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 7520 - 7404
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||  |||||| |||| |||||| | | |||||| |||||| ||||  | ||||||||||||||||||||| || ||||||| ||||||    
T  7520 caacaacataatcaataatatttcatggtttgtcatcaacaacaaattcaacgattcgacgacgacaacgtcaacctgacaatactactacgtcagagta 7421  T
Q  224 caccacctcttataata 240  Q
    |||||||||||||||||    
T  7420 caccacctcttataata 7404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 103 - 218
Alignment:
Q  123 gcaacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagt 222  Q
    ||||||||||| |||| || |||| ||| |||||| | | ||||||||||||| ||||  | | |||||||| |||||| ||| ||||||||||||||||    
T  103 gcaacaacataatcattaacattctatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtaaacctgtcaatacaactacgtgagagt 202  T
Q  223 acaccacctcttataa 238  Q
    ||||||||||||||||    
T  203 acaccacctcttataa 218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 71043 - 70933
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| | |||||||||||||||||    
T  71043 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatataactacgtgagagtaca 70944  T
Q  226 ccacctcttat 236  Q
    ||| |||||||    
T  70943 ccatctcttat 70933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0877 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 3326 - 3221
Alignment:
Q  135 tcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctctt 234  Q
    |||| |||||| |||| |||||| ||| ||||||||||||| ||||  | | || |||||||||||||||| ||| ||||||||||||| ||||||||||    
T  3326 tcattaatatttcatggtttgtccttaacaacaacttcaacgattcgacgatgaaaacgtcaacctgacaatacagctacgtgagagtaaaccacctctt 3227  T
Q  235 ataata 240  Q
    ||||||    
T  3226 ataata 3221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 75924 - 76034
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| ||||||||||| | |||| | | ||||||||||||| ||||| |||||||||||||||||||  || ||||| |||| ||||||||    
T  75924 acaacataatcattaatattccatggtgtgtcatcaacaacaacttcaacgattcaacaacgacaacgtcaacctg--aaaacaacaacgtaagagtaca 76021  T
Q  226 ccacctcttataa 238  Q
    || ||||||||||    
T  76022 cctcctcttataa 76034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 362278 - 362388
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||| || ||| |||| |||||| | | ||||||||||||| ||||  | |||||||||||||| || ||| |||||||||||||||||||    
T  362278 acaacataatcattaacatttcatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacatgtcaatacaactacgtgagagtaca 362377  T
Q  226 ccacctcttat 236  Q
    ||| |||||||    
T  362378 ccaactcttat 362388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 7819 - 7931
Alignment:
Q  124 caacaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagta 223  Q
    |||||||||| |||| |  |||||||| |||||| | | ||||||||||||| ||||  | |||||||| |||||||| ||| ||||||| |||||| ||    
T  7819 caacaacataatcattatcattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacatcaacctgtcaatacaactatgtgagatta 7918  T
Q  224 caccacctcttat 236  Q
    |||||||||||||    
T  7919 caccacctcttat 7931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 12578 - 12677
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataat 239  Q
    |||||| |||| |||||| | | ||||||||||||| ||||  | ||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||    
T  12578 aatatttcatgttttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacc-gacaatacaactacgtaagagtacacgacctcttataat 12676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0780 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0780
Description:

Target: scaffold0780; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 3905 - 3798
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    ||||| || ||||||||||| |||| |||||| | | ||||||| ||||||||||  | |||||||||||||| |||||| ||||| || | ||||||||    
T  3905 acaacgtaatcatcaatatttcatgctttgtcatcaacaacaacgtcaacaattcgacgacgacaacgtcaacttgacaatacaacaacataagagtaca 3806  T
Q  226 ccacctct 233  Q
    ||||||||    
T  3805 ccacctct 3798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 15328 - 15438
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 225  Q
    |||||||| |||  |||||| |||  |||||| | | ||||||||||||| ||||  | | ||||||||||||||| ||| ||||||||||||||| |||    
T  15328 acaacataatcaataatatttcatagtttgtcataaacaacaacttcaacgattcgacgatgacaacgtcaacctgtcaatacaactacgtgagagcaca 15427  T
Q  226 ccacctcttat 236  Q
    |||||||||||    
T  15428 ccacctcttat 15438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 7192 - 7290
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    ||||||||||| |||| | | | ||||||||||||| ||||    ||||||| |||| || ||||| |||||||||||| |||||||||||||||||||    
T  7192 aatattccatggtttggcatcaacaacaacttcaacgattcggtgacgacaatgtcagcccgacaatacaactacgtgatagtacaccacctcttataa 7290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 13805 - 13855
Alignment:
Q  188 acaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  13805 acaatgtcaacccgacaatacaactacgtgagagtacaccacctcttataa 13855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 16225 - 16323
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    ||||||||||| |||| | | | ||||||||||||| ||||    ||||||| |||| || ||||| |||||||||||| |||||||||||||||||||    
T  16225 aatattccatggtttggcatcaacaacaacttcaacgattcggtgacgacaatgtcagcccgacaatacaactacgtgatagtacaccacctcttataa 16323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 18245 - 18343
Alignment:
Q  140 aatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctcttataa 238  Q
    ||||||||||| |||| | | | ||||||||||||| ||||    ||||||| |||| || ||||| |||||||||||| |||||||||||||||||||    
T  18245 aatattccatggtttggcatcaacaacaacttcaacgattcggtgacgacaatgtcagcccgacaatacaactacgtgatagtacaccacctcttataa 18343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 1693 - 1780
Alignment:
Q  126 acaacatattcatcaatattccatgatttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaacta 213  Q
    |||||||| |||| || |||||||| |||||| | | ||||||||||||| ||||  | ||||||||||||||||| ||| |||||||    
T  1693 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaacta 1780  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 2457 - 2342
Alignment:
Q  126 acaacatattcatcaatattccatgattt-gtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 224  Q
    |||||||| |||| |||||| |||| ||| ||| | | ||||||||||||| ||||  | | ||||||| |||| ||| || ||| |||| |||||||||    
T  2457 acaacataatcattaatatttcatggttttgtcatcaacaacaacttcaacgattcgacgatgacaacgacaacttgataatacagctacatgagagtac 2358  T
Q  225 accacctcttataata 240  Q
    ||||||| ||||||||    
T  2357 accaccttttataata 2342  T

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