View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9584_low_23 (Length: 256)
Name: NF9584_low_23
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 22594925 - 22595088
Alignment:
| Q |
13 |
gtttggaggtaaatataatccttaaagttaaaatcaatttcaaaaaacaagaagnnnnnnnnntactaaaagcaactaaatatatgaaagtgaaatttat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22594925 |
gtttggaggtaaatataatccttaaagttaaaatcaatttcaaaaaacaagaa--aaaaaaaatactaaaagcaactaaatatatgaaagtgaa-tttat |
22595021 |
T |
|
| Q |
113 |
atttttaaaagcacttttataagttaatcagccataaagatttctttcataatgttttgcaacgaga |
179 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22595022 |
atttttaaaagcacttttataagtcaatcagccatgaagatttctttcataatgttttgcaacgaga |
22595088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 22595262 - 22595324
Alignment:
| Q |
177 |
agacgtatgtgcttggatacacatttgtaaaatcacggcaaataactatattaacgcagaaac |
239 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22595262 |
agacgtatgtgcttggatacacgtttgcaaaatcacggcaaataactatattaactcagaaac |
22595324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University