View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9584_low_25 (Length: 251)

Name: NF9584_low_25
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9584_low_25
NF9584_low_25
[»] chr2 (7 HSPs)
chr2 (140-246)||(35016259-35016365)
chr2 (157-246)||(37794604-37794693)
chr2 (145-246)||(17988928-17989029)
chr2 (114-246)||(5430276-5430408)
chr2 (150-246)||(19263860-19263956)
chr2 (175-235)||(20929880-20929940)
chr2 (201-236)||(11808663-11808698)
[»] chr1 (6 HSPs)
chr1 (145-246)||(9457742-9457843)
chr1 (145-246)||(9461839-9461940)
chr1 (115-246)||(32617481-32617612)
chr1 (145-246)||(12990642-12990743)
chr1 (115-246)||(34664906-34665039)
chr1 (190-236)||(26828605-26828651)
[»] chr6 (4 HSPs)
chr6 (145-245)||(26660557-26660657)
chr6 (145-245)||(26766528-26766628)
chr6 (140-246)||(9177720-9177818)
chr6 (115-197)||(8169049-8169131)
[»] chr4 (8 HSPs)
chr4 (140-246)||(25968127-25968237)
chr4 (118-246)||(28147110-28147238)
chr4 (146-246)||(55606188-55606288)
chr4 (135-244)||(13198011-13198120)
chr4 (156-246)||(11440695-11440785)
chr4 (115-236)||(21315477-21315598)
chr4 (182-244)||(29866152-29866214)
chr4 (193-244)||(38411857-38411908)
[»] chr5 (9 HSPs)
chr5 (115-246)||(13424551-13424681)
chr5 (115-238)||(41283626-41283749)
chr5 (115-233)||(19967627-19967745)
chr5 (62-111)||(36605389-36605438)
chr5 (202-239)||(39426088-39426125)
chr5 (146-245)||(36491615-36491714)
chr5 (182-236)||(37247652-37247706)
chr5 (160-236)||(6887910-6887986)
chr5 (202-246)||(22927062-22927106)
[»] chr8 (7 HSPs)
chr8 (145-246)||(23489911-23490011)
chr8 (202-246)||(13402210-13402254)
chr8 (203-246)||(13396912-13396955)
chr8 (202-242)||(14370815-14370855)
chr8 (160-236)||(20762728-20762804)
chr8 (112-241)||(45191525-45191652)
chr8 (202-246)||(7154254-7154298)
[»] chr7 (8 HSPs)
chr7 (151-246)||(45435552-45435647)
chr7 (163-246)||(47363662-47363745)
chr7 (207-246)||(10493372-10493411)
chr7 (202-246)||(25635901-25635945)
chr7 (151-246)||(7493011-7493105)
chr7 (204-246)||(33049254-33049296)
chr7 (194-231)||(35451056-35451093)
chr7 (202-246)||(39653454-39653498)
[»] chr3 (2 HSPs)
chr3 (209-246)||(53527193-53527230)
chr3 (202-246)||(11783404-11783448)
[»] scaffold0006 (1 HSPs)
scaffold0006 (160-236)||(75596-75672)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 35016259 - 35016365
Alignment:
Q  140 tcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactc 239  Q
    |||||||| |||||||||||||||||||||||||||||   ||||||||||||| | |||  |||||||||||||||||||| |||||||| ||||||||    
T  35016259 tcgcagtcccgtataggatttcgcgatttcggccgttaaaggtgttgcgatacaaactgcggttgtcgcggtgtgaattaatcacaacattacacaactc 35016358  T
Q  240 ttaaata 246  Q
    |||||||    
T  35016359 ttaaata 35016365  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 37794604 - 37794693
Alignment:
Q  157 atttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    ||||||||||||||||||||| | |||||||||||||||||||  |||||| ||||||||||||| ||||||||||||||||||||||||    
T  37794604 atttcgcgatttcggccgttatgggtgttgcgatacagattgcggttgtcgtggtgtgaattaatcacaacattgcacaactcttaaata 37794693  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 17988928 - 17989029
Alignment:
Q  145 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    |||||||| |||||||||| |||||||| |||||| |||||||||||| ||||||  |||||| ||||||||||||| |||| |||||||||||||||||    
T  17988928 gtcgcgtacaggatttcgcaatttcggctgttacgggtgttgcgatacggattgcggttgtcgaggtgtgaattaatcacaatattgcacaactcttaaa 17989027  T
Q  245 ta 246  Q
    ||    
T  17989028 ta 17989029  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 5430408 - 5430276
Alignment:
Q  114 attttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgt 213  Q
    ||||||||||| ||||| |  |||  |||| |||||||||| |||||  |||||||||  ||||||  ||||||  |||||||||   ||||||||||||    
T  5430408 attttaaataatggtcgcgaacaatgtcgcggtcgcgtatatgattttacgatttcggttgttacggatgttgcattacagattgtggttgtcgcggtgt 5430309  T
Q  214 gaattaataacaacattgcacaactcttaaata 246  Q
    |||||||| |||| |||||||||||||||||||    
T  5430308 gaattaatcacaatattgcacaactcttaaata 5430276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 19263956 - 19263860
Alignment:
Q  150 gtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    ||||| ||||| ||||||||||  |||| | |||||||||||   |||||  |||| ||| ||||||||||| |||||||||||||| |||||||||    
T  19263956 gtatatgattttgcgatttcggttgttatgggtgttgcgatatcaattgcggttgttgcgctgtgaattaatcacaacattgcacaattcttaaata 19263860  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 20929940 - 20929880
Alignment:
Q  175 ttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcaca 235  Q
    ||||||||| |||||||||||| ||  |||||||||||||||||||| |||||| ||||||    
T  20929940 ttacgagtgctgcgatacagatcgcggttgtcgcggtgtgaattaatcacaacaatgcaca 20929880  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 11808698 - 11808663
Alignment:
Q  201 attgtcgcggtgtgaattaataacaacattgcacaa 236  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11808698 attgtcgcggtgtgaattaattacaacattgcacaa 11808663  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 9457843 - 9457742
Alignment:
Q  145 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||||||||    
T  9457843 gtcgcgtataggatttcacgatttcggtcgttatgggtgttgcgatacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaa 9457744  T
Q  245 ta 246  Q
    ||    
T  9457743 ta 9457742  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 9461940 - 9461839
Alignment:
Q  145 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||||| ||||||  |||| ||||||||||||||| ||||||||||||||||||||||    
T  9461940 gtcgcgtataggatttcacgatttcggtcgttatgggtgttgcgatacggattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaa 9461841  T
Q  245 ta 246  Q
    ||    
T  9461840 ta 9461839  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 32617481 - 32617612
Alignment:
Q  115 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 214  Q
    ||||||| |||||||| ||| ||| |||| || || || | ||||| ||||||||| |||||||| |||||||||||  ||||||  ||||||||||||     
T  32617481 ttttaaaaaacggtcgcggttaaggtcgcggttgcatacatgattttgcgatttcgaccgttacgggtgttgcgatatggattgcggttgtcgcggtgta 32617580  T
Q  215 aattaataacaacattgcacaactcttaaata 246  Q
    ||||||| ||||||||||||||||||||||||    
T  32617581 aattaatcacaacattgcacaactcttaaata 32617612  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 12990743 - 12990642
Alignment:
Q  145 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    |||||||||||||||||  ||||| |||||||||  |||||| ||||  ||||||  |||||||||||||||||| | ||||||||||||||||||||||    
T  12990743 gtcgcgtataggatttcctgattttggccgttacatgtgttgggataaggattgcagttgtcgcggtgtgaattagtcacaacattgcacaactcttaaa 12990644  T
Q  245 ta 246  Q
    ||    
T  12990643 ta 12990642  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 34665039 - 34664906
Alignment:
Q  115 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcg--atttcggccgttacgagtgttgcgatacagattgccattgtcgcggtg 212  Q
    ||||||||||| ||||| |||||| || | |||||||||||||||| |||  |||||||  ||||||  ||||||  ||  |||||   ||||| ||||     
T  34665039 ttttaaataacagtcgtagtcaaggtcaccgtcgcgtataggattttgcgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggta 34664940  T
Q  213 tgaattaataacaacattgcacaactcttaaata 246  Q
    ||||||||| |||||||||||||||| |||||||    
T  34664939 tgaattaattacaacattgcacaacttttaaata 34664906  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 26828651 - 26828605
Alignment:
Q  190 tacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 236  Q
    |||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  26828651 tacagattgttattgtcgcggtgtaaattaatcacaacattgcacaa 26828605  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 26660557 - 26660657
Alignment:
Q  145 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||  |||||  ||||| |||||||||||||| ||||||||||||||||||||||    
T  26660557 gtcgagtataggatttcacaatttcggccgttacgagtgttgcgatacgaattgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaa 26660656  T
Q  245 t 245  Q
    |    
T  26660657 t 26660657  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 26766528 - 26766628
Alignment:
Q  145 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||  |||||  ||||| |||||||||||||| ||||||||||||||||||||||    
T  26766528 gtcgagtataggatttcacaatttcggccgttacgagtgttgcgatacgaattgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaa 26766627  T
Q  245 t 245  Q
    |    
T  26766628 t 26766628  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 9177818 - 9177720
Alignment:
Q  140 tcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactc 239  Q
    |||| ||||||||||||||||| |  ||||||| |||||| |||||| ||||| ||||||       ||||||||||||||| |||||||||||||||||    
T  9177818 tcgcggtcgcgtataggatttcacagtttcggctgttacgggtgttg-gatactgattgc-------gcggtgtgaattaatcacaacattgcacaactc 9177727  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 8169049 - 8169131
Alignment:
Q  115 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagatt 197  Q
    |||||||||||| ||  ||||||| | || || ||||||||||||||  |||||||||| ||||| |||||| ||||| ||||    
T  8169049 ttttaaataacgatcccggtcaaggtagcggttgcgtataggatttcatgatttcggcccttacgggtgttgtgatacggatt 8169131  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 25968237 - 25968127
Alignment:
Q  140 tcgcagtcgcgtataggatttcg----cgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcaca 235  Q
    |||| ||||||||||||||||||    ||||||||||||||| | ||||||| |||| ||||||  |||||||||||||||||||| |||||||||||||    
T  25968237 tcgcggtcgcgtataggatttcgaatgcgatttcggccgttatgggtgttgctatacggattgcggttgtcgcggtgtgaattaatcacaacattgcaca 25968138  T
Q  236 actcttaaata 246  Q
    |||||||||||    
T  25968137 actcttaaata 25968127  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 246
Target Start/End: Complemental strand, 28147238 - 28147110
Alignment:
Q  118 taaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaat 217  Q
    |||||||||||   ||||| | |||| ||| | |||||||||| || ||||||||| ||||| ||||| ||||||||| |||  ||||||||||||||||    
T  28147238 taaataacggtaacggtcacggtcgcggtcacatataggattttgcaatttcggccattacgggtgttacgatacagagtgcggttgtcgcggtgtgaat 28147139  T
Q  218 taataacaacattgcacaactcttaaata 246  Q
    |||| ||||||||||||||||||||||||    
T  28147138 taatcacaacattgcacaactcttaaata 28147110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 55606188 - 55606288
Alignment:
Q  146 tcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat 245  Q
    |||| |||||||||| |||||||||  ||||||| ||||||||||||||||| |  |||||||  ||||||||||| |||||||||||||||||||||||    
T  55606188 tcgcatataggattttgcgatttcgatcgttacgggtgttgcgatacagattacggttgtcgcattgtgaattaatcacaacattgcacaactcttaaat 55606287  T
Q  246 a 246  Q
    |    
T  55606288 a 55606288  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 13198011 - 13198120
Alignment:
Q  135 caagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcac 234  Q
    |||| |||| ||||||||||||||||| ||||||||||   || | |||||||| ||  |||||  ||||||||||||||||||||| ||||||||||||    
T  13198011 caagatcgcggtcgcgtataggatttcacgatttcggcatgtatgggtgttgcgttaaggattgtgattgtcgcggtgtgaattaatcacaacattgcac 13198110  T
Q  235 aactcttaaa 244  Q
    ||||||||||    
T  13198111 aactcttaaa 13198120  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 11440785 - 11440695
Alignment:
Q  156 gatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||||| |||||||||| ||||||| ||||||| ||  |||||   |||||||||||||||||||| |||||||||  |||||||||||||    
T  11440785 gatttcacgatttcggctgttacgaatgttgcgttatggattgttgttgtcgcggtgtgaattaatcacaacattgttcaactcttaaata 11440695  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 21315477 - 21315598
Alignment:
Q  115 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 214  Q
    |||||||||||||||  ||||  | |||| |||||||  ||| |||||||||||| || ||||||  ||||||  |||||||| |  | |||||||||||    
T  21315477 ttttaaataacggtcacggtctcggtcgcggtcgcgttaaggttttcgcgatttcagctgttacggatgttgcattacagattacggtcgtcgcggtgtg 21315576  T
Q  215 aattaataacaacattgcacaa 236  Q
    ||||||| |||||| |||||||    
T  21315577 aattaatcacaacaatgcacaa 21315598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 29866214 - 29866152
Alignment:
Q  182 tgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    ||||||| |||||||||   |||||| ||||||||||||| |||||||||||||| |||||||    
T  29866214 tgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatcttaaa 29866152  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 38411857 - 38411908
Alignment:
Q  193 agattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    |||||||  |||||||| ||||||||||| |||||||||||||||| |||||    
T  38411857 agattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaa 38411908  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 13424551 - 13424681
Alignment:
Q  115 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 214  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||| || |||||| |  ||| | |||| || ||||||||||   |||||| ||||||    
T  13424551 ttttaaataacggtcgcggtcaaggtcgcagtcgcgtataagattttgcaatttcgactcttatgggtgtggc-atacagattgtagttgtcgtggtgtg 13424649  T
Q  215 aattaataacaacattgcacaactcttaaata 246  Q
    ||||||| ||||||||||||||||||||||||    
T  13424650 aattaatcacaacattgcacaactcttaaata 13424681  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 41283749 - 41283626
Alignment:
Q  115 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 214  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||| ||  | |||||| ||||| || |    |||||| ||||||    
T  41283749 ttttaaataacggtcgtggtcaaggtcgcggtcgcttataggatttcgtgatttcggccattttgggtgttgtgatacggagtatggttgtcgtggtgtg 41283650  T
Q  215 aattaataacaacattgcacaact 238  Q
    ||||||| ||||||||||||||||    
T  41283649 aattaatcacaacattgcacaact 41283626  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 19967745 - 19967627
Alignment:
Q  115 ttttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtg 214  Q
    ||||||||||||||||  |||||| |||  || ||| |||||||||||||||||||||||||| | ||||||| | || ||||||  ||||||| ||| |    
T  19967745 ttttaaataacggtcgcagtcaaggtcgaggttgcggataggatttcgcgatttcggccgttatgggtgttgcaacactgattgcggttgtcgcagtgag 19967646  T
Q  215 aattaataacaacattgca 233  Q
    ||||||| |||||||||||    
T  19967645 aattaatcacaacattgca 19967627  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 36605389 - 36605438
Alignment:
Q  62 aaccccatgattacacaatacatgaaaattatgaactaaaacactatcat 111  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  36605389 aaccccatgataacacaatacatgaaaattatcaactaaaacactatcat 36605438  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 39426088 - 39426125
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactc 239  Q
    |||||||||||||||||||| |||||||||||||||||    
T  39426088 ttgtcgcggtgtgaattaattacaacattgcacaactc 39426125  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 36491714 - 36491615
Alignment:
Q  146 tcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaat 245  Q
    ||||||||||||||| ||||||||  | ||||||  ||||||  ||| |||| |  ||||| |||||||||||||| | ||||||||| || ||||||||    
T  36491714 tcgcgtataggattttgcgatttcaactgttacggatgttgcactacggattacggttgtcacggtgtgaattaatcataacattgcaaaattcttaaat 36491615  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 37247706 - 37247652
Alignment:
Q  182 tgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 236  Q
    ||||||| |||||||||   |||||||||||||||||||| |||||| |||||||    
T  37247706 tgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaa 37247652  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 6887910 - 6887986
Alignment:
Q  160 tcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 236  Q
    ||||||||||||| ||||||  ||||||  ||| |||||| ||  |||||||||||||| || |||||| |||||||    
T  6887910 tcgcgatttcggctgttacggatgttgctttactgattgcgatcttcgcggtgtgaattgatcacaacaatgcacaa 6887986  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 22927062 - 22927106
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    ||||||||  |||||||||| |||||||||| |||||||||||||    
T  22927062 ttgtcgcgacgtgaattaatcacaacattgcccaactcttaaata 22927106  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 23489911 - 23490011
Alignment:
Q  145 gtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaa 244  Q
    |||||||||||||||| |||||| ||||||||| | |||||||| ||| ||| ||  |||| ||||||||||||||| ||||||||| ||||||||||||    
T  23489911 gtcgcgtataggattttgcgattccggccgttatgggtgttgcggtacggat-gcggttgttgcggtgtgaattaatcacaacattgtacaactcttaaa 23490009  T
Q  245 ta 246  Q
    ||    
T  23490010 ta 23490011  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 13402254 - 13402210
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  13402254 ttgtcgcggtgtgaattaatcacaacattacacaactcttaaata 13402210  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 13396955 - 13396912
Alignment:
Q  203 tgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  13396955 tgtcgcggtgtgaattaatcacaacattacacaactcttaaata 13396912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 14370855 - 14370815
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactctta 242  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  14370855 ttgtcgtggtgtgaattaatcacaacattgcacaactctta 14370815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 20762728 - 20762804
Alignment:
Q  160 tcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 236  Q
    ||||||||||||| ||||||  ||||||| ||| ||||||  | |||||||||||||||||| | |||| |||||||    
T  20762728 tcgcgatttcggctgttacggatgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaa 20762804  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 45191525 - 45191652
Alignment:
Q  112 aaattttaaataacggtcgtggtcaagttcgcagtcgcgtataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggt 211  Q
    |||||||||||||| |||||| | ||| | |  |||||||||||||||||  |||||||   ||||| | ||||| | ||||||||||  |||||| |||    
T  45191525 aaattttaaataacagtcgtgcttaaggttgg-gtcgcgtataggatttcatgatttcgaatgttactaatgttg-gttacagattgcggttgtcgtggt 45191622  T
Q  212 gtgaattaataacaacattgcacaactctt 241  Q
    |||| ||||| || || |||||||||||||    
T  45191623 gtgagttaatcactacgttgcacaactctt 45191652  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 7154254 - 7154298
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||||| | ||||||||||| |||||||||||||| |||||||||    
T  7154254 ttgtcgtgatgtgaattaatcacaacattgcacaagtcttaaata 7154298  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 45435647 - 45435552
Alignment:
Q  151 tataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||||||||| | |||||| ||  |||| | ||||| | |||| |||||  || |||||||||||||||||||||| |||||||||||||||||||    
T  45435647 tataggattttgtgatttcagcttttacaaatgttgtgttacacattgcagttatcgcggtgtgaattaataacaatattgcacaactcttaaata 45435552  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 47363662 - 47363745
Alignment:
Q  163 cgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    ||||||| ||||||||| ||||||||||| | |||||  |||||  ||||||||||||| | |||||||||||| |||||||||    
T  47363662 cgatttcagccgttacgggtgttgcgatataaattgcggttgtcttggtgtgaattaatcaaaacattgcacaagtcttaaata 47363745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 10493372 - 10493411
Alignment:
Q  207 gcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  10493372 gcggtgtgaattaatcacaacattgcacaactcttaaata 10493411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 25635901 - 25635945
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||    
T  25635901 ttgttgcggtgtgaattaatcacaacattgcacacctcttaaata 25635945  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 7493011 - 7493105
Alignment:
Q  151 tataggatttcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||||||||||| |||||| |  |||||| ||||| |||| | |||||   || || |||||||||||||| |||||||| |||||||||||||||    
T  7493011 tataggatttcgtgatttcagttgttacgggtgtt-cgattcggattgtggttatcacggtgtgaattaatcacaacattacacaactcttaaata 7493105  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 33049296 - 33049254
Alignment:
Q  204 gtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  33049296 gtcgaggtgtgaattaatcaaaacattgcacaactcttaaata 33049254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 35451056 - 35451093
Alignment:
Q  194 gattgccattgtcgcggtgtgaattaataacaacattg 231  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  35451056 gattgccattgttgcggtgtgaattaatcacaacattg 35451093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 39653454 - 39653498
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||| ||||||||||||||| |||| ||| |||||||||||||||    
T  39653454 ttgttgcggtgtgaattaatcacaatattccacaactcttaaata 39653498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 53527230 - 53527193
Alignment:
Q  209 ggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  53527230 ggtgtgaattaatcacaacattgcacaacttttaaata 53527193  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 11783404 - 11783448
Alignment:
Q  202 ttgtcgcggtgtgaattaataacaacattgcacaactcttaaata 246  Q
    |||||||  |||||| |||| ||||||||||||||||||||||||    
T  11783404 ttgtcgctttgtgaagtaattacaacattgcacaactcttaaata 11783448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 75672 - 75596
Alignment:
Q  160 tcgcgatttcggccgttacgagtgttgcgatacagattgccattgtcgcggtgtgaattaataacaacattgcacaa 236  Q
    |||||||||||||  |||||  ||||||| ||| ||||||  | |||||||||||||||||| | |||| |||||||    
T  75672 tcgcgatttcggctattacgtatgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaa 75596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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