View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_28 (Length: 239)
Name: NF9584_low_28
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 46873457 - 46873661
Alignment:
| Q |
18 |
gtggttgcgttgtctattatgtttcatgtttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaat |
117 |
Q |
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| T |
46873457 |
gtggttgcgttgtctattatgtttcatgtttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaat |
46873556 |
T |
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| Q |
118 |
gagcaattgttatattgtttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatc |
217 |
Q |
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| T |
46873557 |
gagcaattgttatattgtttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatc |
46873656 |
T |
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| Q |
218 |
aaatt |
222 |
Q |
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||||| |
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| T |
46873657 |
aaatt |
46873661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 46891043 - 46891075
Alignment:
| Q |
190 |
ttaatgatcacattatctccttgttatcaaatt |
222 |
Q |
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| T |
46891043 |
ttaatgatcacattatctccttgttatcaaatt |
46891075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 48232273 - 48232222
Alignment:
| Q |
68 |
tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg |
118 |
Q |
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| T |
48232273 |
tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg |
48232222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 48237313 - 48237262
Alignment:
| Q |
68 |
tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg |
118 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
48237313 |
tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg |
48237262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 48232219 - 48232183
Alignment:
| Q |
186 |
atgattaatgatcacattatctccttgttatcaaatt |
222 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
48232219 |
atgattaacgatcacattatctccttgttatcaaatt |
48232183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 48237259 - 48237223
Alignment:
| Q |
186 |
atgattaatgatcacattatctccttgttatcaaatt |
222 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
48237259 |
atgattaacgatcacattatctccttgttatcaaatt |
48237223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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