View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_29 (Length: 239)
Name: NF9584_low_29
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 43464931 - 43465139
Alignment:
| Q |
14 |
cagagagaccaaaatctgttgccttcatttcagcatcttcaccaggggtatcaaacaagaaattctcaggcttaagatctctgtgcatgacaccaagaga |
113 |
Q |
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| T |
43464931 |
cagagagaccaaaatctgttgccttcatttcagcatcttcaccaggggtatcaaacaagaaattttcaggcttaagatctctgtgcatgacaccaagaga |
43465030 |
T |
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| Q |
114 |
atgacatgtctcaacaacaccaacaattgtcttcatcaactttgcagcctctttctcactataatgacccttttgaatgatcttatcaaaaagctcacca |
213 |
Q |
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| T |
43465031 |
atgacatgtctcaacaacaccaacaattgtcttcatcaactttgcagcctctttctcactataatgacccttttgaatgatcttatcaaaaagctcacca |
43465130 |
T |
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| Q |
214 |
ccagcacac |
222 |
Q |
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| T |
43465131 |
ccagcacac |
43465139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 18400193 - 18400129
Alignment:
| Q |
73 |
aaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaac |
137 |
Q |
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| T |
18400193 |
aaattctcgggcttaaggtctctatgcatcacaccaagagaatgacaggcttcaacaacaccaac |
18400129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 24420822 - 24420889
Alignment:
| Q |
73 |
aaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaat |
140 |
Q |
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| T |
24420822 |
aaattctccggcttaagatcgcgatgcattacaccaagagaatgacatgactgaataacaccaacaat |
24420889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 44767019 - 44766907
Alignment:
| Q |
73 |
aaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaattgtcttcatcaactttgcagcctctttctcac |
172 |
Q |
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||||||||||| ||||| ||||| ||||| || |||||||||||||| | |||||||| ||||||| ||||| |||||||| ||||| | | |||||| |
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| T |
44767019 |
aaattctcaggtttaaggtctctatgcataactccaagagaatgacaagcttcaacaacctcaacaatagtcttaatcaacttagcagcttgtctctcac |
44766920 |
T |
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| Q |
173 |
tataatgaccctt |
185 |
Q |
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| T |
44766919 |
tataatgaccctt |
44766907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 44756936 - 44756820
Alignment:
| Q |
63 |
atcaaacaagaaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaattgtcttcatcaactttgcagcc |
162 |
Q |
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| T |
44756936 |
atcaaacaaaaaattctcaggtttaaggtctctgtgcataactccaagagaatgacaagcttcaacaacctcaacaatagttctaatcaacttagcagct |
44756837 |
T |
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| Q |
163 |
tctttctcactataatg |
179 |
Q |
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| | ||||||||||||| |
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| T |
44756836 |
tgtctctcactataatg |
44756820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 43503149 - 43503088
Alignment:
| Q |
79 |
tcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaat |
140 |
Q |
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|||||||| |||||||| ||||| |||||||| |||||||| | ||| |||||||||||||| |
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| T |
43503149 |
tcaggcttgagatctctatgcataacaccaagggaatgacaggcctcgacaacaccaacaat |
43503088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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