View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_38 (Length: 204)
Name: NF9584_low_38
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 8602559 - 8602387
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaaacctgaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8602559 |
agaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttgtggccatttaaggttgttcctggcaatgatgacaaacctgagat |
8602460 |
T |
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| Q |
118 |
cattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatg |
190 |
Q |
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| T |
8602459 |
cattgttaagtataagggtggggaaaagcacttctgtgctgaggaaatctcatcaatggtccttacaaagatg |
8602387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 7877316 - 7877488
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaaacctgaaat |
117 |
Q |
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| T |
7877316 |
agaggttgattggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggttgttgctggttctgatgacaagcctgatat |
7877415 |
T |
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| Q |
118 |
cattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatg |
190 |
Q |
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| T |
7877416 |
cattgttaagtataagggcgaggaaaagcacttttgtgccgaggaaatatcatccatgatccttacaaagatg |
7877488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 8591223 - 8591051
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaaacctgaaat |
117 |
Q |
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| T |
8591223 |
agaggttgattggaaggaaattcagtgattctgtaattcagaatgacatggaattgtggccatttaaggttgtttccggttttgatgacaagcctgaaat |
8591124 |
T |
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| Q |
118 |
cattgttatgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatg |
190 |
Q |
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| T |
8591123 |
cattgttaagtacaagggtgaggaaaagcgtctttgtgcggaggaaatctcatccatggttctcacaaagatg |
8591051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 8382467 - 8382631
Alignment:
| Q |
26 |
attggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaaacctgaaatcattgtta |
125 |
Q |
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| T |
8382467 |
attggaaggaaatatagtgattctattattcagaatgacatacaattatggccatttaaagtacttgctggttctgatgacaagcctgagataattgtta |
8382566 |
T |
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| Q |
126 |
tgtataagggtggggaaaagcgcttctgtgctgaggaaatctcatcaatagtcctaacaaagatg |
190 |
Q |
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| T |
8382567 |
agtataagggtgaggaaaaacacctttgtgccgaggaaatctcctctatggtcctcaaaaagatg |
8382631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 29581424 - 29581514
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggttgttcctggcaatgatgacaa |
108 |
Q |
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| T |
29581424 |
agaggttaatcggaagaaaatatagtgattctattattcaggatgatataaatttgtggccctttaaggtagttgctggcactgatgacaa |
29581514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 8546217 - 8546148
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggt |
87 |
Q |
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| T |
8546217 |
agaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggt |
8546148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 8576911 - 8576881
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattc |
48 |
Q |
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| T |
8576911 |
agaggttaattggaaggaaatatagtgattc |
8576881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 8582285 - 8582255
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattc |
48 |
Q |
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| T |
8582285 |
agaggttaattggaaggaaatatagtgattc |
8582255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 8538621 - 8538552
Alignment:
| Q |
18 |
agaggttaattggaaggaaatatagtgattctgtcattcagactgacatacagttgtggccatttaaggt |
87 |
Q |
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| T |
8538621 |
agaggttggttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggt |
8538552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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