View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_4 (Length: 483)
Name: NF9584_low_4
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 33216626 - 33216830
Alignment:
| Q |
11 |
cagagagagataatgatcttcttgaagnnnnnnntgcatactctttatgcatgcttaatagtttattttcaggtgcaaaaagaggtttttcagatgccat |
110 |
Q |
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| T |
33216626 |
cagagagagataatgatcttcttgaagaaaaaaatgcatactctttatgcatgcttaatagtttattttcaggtgcaaaaagaggtttttcagatgccat |
33216725 |
T |
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| Q |
111 |
tgatatgagaagaagttccaaccaacaaggttctgttgcgaaagatcaaacaaatcctttgaatgagaagaagaagtctcagatatctggttcagctgca |
210 |
Q |
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| T |
33216726 |
tgatatgagaaaaagttccaaccaacaaggttctgttgcgaaagatcaaacaaatcctttgaacgagaagaagaagtctcagatatctggttcagctgca |
33216825 |
T |
|
| Q |
211 |
aagta |
215 |
Q |
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||||| |
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| T |
33216826 |
aagta |
33216830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 287 - 467
Target Start/End: Original strand, 33216902 - 33217091
Alignment:
| Q |
287 |
aaacttttaggctttgtttggatatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaataaatatgct |
386 |
Q |
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| T |
33216902 |
aaacttttaggctttgtttggatatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaataaatatgct |
33217001 |
T |
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| Q |
387 |
tttatat---------gttattttcacaagctattctggaaagcatatgtaaataagctccataggcggttatcaataagatgaaaatat |
467 |
Q |
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| T |
33217002 |
tttatataagttacacgttatgttcacaagctattctggaaagcatatgtaaataagctccataagcggttatcaataagatgaaaatat |
33217091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 31668845 - 31668790
Alignment:
| Q |
309 |
tatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaa |
364 |
Q |
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| T |
31668845 |
tatagcataagcaattatcatataagtgcttatgtataagctatttctataacaaa |
31668790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 3217350 - 3217305
Alignment:
| Q |
309 |
tatagtataagcaattatcatataagtccttatgtagaagttattt |
354 |
Q |
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| T |
3217350 |
tatagtataagcgattatcatataagtgcttatgtataagctattt |
3217305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 12972766 - 12972816
Alignment:
| Q |
309 |
tatagtataagcaattatcatataagtccttatgtagaagttatttcaata |
359 |
Q |
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| T |
12972766 |
tatagcataagcatttatcatataagtgcttatgtataagctatttcaata |
12972816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 2400072 - 2400126
Alignment:
| Q |
315 |
ataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataa |
369 |
Q |
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|||| |||||||||||||||| |||||||| ||||| |||| ||| ||||||||| |
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| T |
2400072 |
ataaacaattatcatataagtgcttatgtataagttgtttctataacaaagataa |
2400126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 35809857 - 35809911
Alignment:
| Q |
323 |
ttatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaat |
377 |
Q |
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| T |
35809857 |
ttatcatataagtgcttatgtataagttatttccatgacaaagataaaataaaat |
35809911 |
T |
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