View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_6 (Length: 434)
Name: NF9584_low_6
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 247 - 426
Target Start/End: Complemental strand, 32314338 - 32314149
Alignment:
| Q |
247 |
caacacatcaacaattcaagacctct-------atcactccaaccatttctaattaccattatggccacctctgagtaccacaccaaccaccattttgat |
339 |
Q |
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| T |
32314338 |
caacacatcaacaattcaagacctctgtcgattatcactccaaccatttctaattaccattatggccacctctgagtaccacaccaaccaccattttgat |
32314239 |
T |
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| Q |
340 |
gccacttccaatcgttgcatctacttgtccacct---atcaccaccctgaccatcactgtggcacacttctgaccccacttggaccacca |
426 |
Q |
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| T |
32314238 |
gccacttccaatcgttgcatctacttgtccacctatgatcaccaccctgaccatcactgtggcacacttctgaccccacttggaccacca |
32314149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 32314555 - 32314423
Alignment:
| Q |
31 |
taagaaaagttcttttctatctatcaaattttcccggctgcccattatcttagggttcatttggggtgattctaactttctgatttttaaagttgaattt |
130 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32314555 |
taagaaaagttcttttctatctatcaaattttccccactgcccattattttagggttcatttggggtgattctaactttctgatttttaaagttgaattt |
32314456 |
T |
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| Q |
131 |
gaaaacaaaatatattcggataaaatgataggg |
163 |
Q |
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| T |
32314455 |
gaaaacaaaatatattcggataaaatgataggg |
32314423 |
T |
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