View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9584_low_9 (Length: 386)
Name: NF9584_low_9
Description: NF9584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9584_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 2795013 - 2794646
Alignment:
| Q |
16 |
cagtctcgtataccttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaagtttctc |
115 |
Q |
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| T |
2795013 |
cagtctcatataccttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaagtttctc |
2794914 |
T |
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| Q |
116 |
attaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacattttccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794913 |
attaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcacattttccc |
2794814 |
T |
|
| Q |
216 |
tttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagtatccggcattgacccccattttccccaactccatcaccagttcccctat |
315 |
Q |
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| T |
2794813 |
tttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagcatccggcgttgacccccattttccccaactccatcaccagttcccctat |
2794714 |
T |
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| Q |
316 |
caatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttttccaaagttcttctcc |
384 |
Q |
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| T |
2794713 |
caatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctcc-aagttcttctcc |
2794646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 27 - 265
Target Start/End: Complemental strand, 29262515 - 29262277
Alignment:
| Q |
27 |
accttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaagtttctcattaggatcaa |
126 |
Q |
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| T |
29262515 |
accttgctctgaactctattcaactgtgtcattcctttgaaagccggttgtgcccaatcaggcatggcggaaatcttcaaaagcttctcattaggatcaa |
29262416 |
T |
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| Q |
127 |
tgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcg-gaagcctgtaagacccatcaggaagatcacattttccctttgtcataa |
225 |
Q |
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||||||||||||||| || || |||||||| |||| |||||||||| ||| || |||| ||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
29262415 |
ggggtttagccttcaatgctggaacatgaatctcttcataacctttt-tcgagatgcctataagacccatcaggaaggtcacattttttctttgccataa |
29262317 |
T |
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| Q |
226 |
acaaaccaccttgttcaaaagcaaggttatccaaatcaag |
265 |
Q |
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| || |||||||||||||||| |||||||| |||||||| |
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| T |
29262316 |
ataacccaccttgttcaaaagtgaggttatctaaatcaag |
29262277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 29189686 - 29189747
Alignment:
| Q |
30 |
ttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcat |
91 |
Q |
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||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||| |
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| T |
29189686 |
ttgctctgcactctattcaggtgagtcattcctttgaaagctggttgtgcccaatcaggcat |
29189747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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