View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9586_high_1 (Length: 509)
Name: NF9586_high_1
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9586_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 25899373 - 25899874
Alignment:
| Q |
1 |
ttaagatcgacagaaggattgaagcaaatcaatgtatcaggaccttgcccattctcatttcaagtttaacctttcataatcacacaatctagggaaatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899373 |
ttaagatcgacagaaggattgaagcaaatcaatgtatcaggaccttgcccattctcatttcaagtttaacctttcataatcacacaatctagggaaatta |
25899472 |
T |
|
| Q |
101 |
gtatgcnnnnnnnnnnnnnnnn--tggcgatnnnnnnncttaaccatcacaggtcactaatc----aatatgaagatcaggaaataaggctatgcaataa |
194 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25899473 |
gtatgcaaaaaaaaaaaaaaaccatggcgataaaaaaacttaaccatcacaggtcactaatcaatcaatatgaagatcaggaaataaggctatgcaataa |
25899572 |
T |
|
| Q |
195 |
gagatagttgtgcttaccgtcaaatcgcaaccttggccgtaagagccacattttccgccatgagccgtcgtattttgattgaagtatcttatagttttca |
294 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899573 |
gagatagttgtgcttaccatcaaatcgcaaccttggccgtaagagccacattttccgccatgagccgtcgtattttgattgaagtatcttatagttttca |
25899672 |
T |
|
| Q |
295 |
accactccagagagcttcataaaaaggctccgtagtcagaaattagacttataagtagtagaagatccatattcaaaacctccaatgacattacctgcca |
394 |
Q |
| |
|
||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899673 |
accgcttcagagagcttcataagaaggctccgtagtcagaaattagacttataagcagtagaagatccatattcaaaacctccaatgacattacctgcca |
25899772 |
T |
|
| Q |
395 |
acccttcaagcatgcattgcgccaaagtacagggttacgaattgtataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcatt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899773 |
acccttcaagcatgcattgcgccaaagtacagggttacgaattgtataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcatt |
25899872 |
T |
|
| Q |
495 |
cg |
496 |
Q |
| |
|
|| |
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|
| T |
25899873 |
cg |
25899874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 37616724 - 37616781
Alignment:
| Q |
49 |
ccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
37616724 |
ccattctcatttcaagtttaaccttccataatcacacaatctagggaaaatagtatgc |
37616781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 137 - 496
Target Start/End: Complemental strand, 40068747 - 40068388
Alignment:
| Q |
137 |
cttaaccatcacaggtcactaatcaatatgaagatcaggaaataaggctatgcaataagagatagttgtgcttaccgtcaaatcgcaaccttggccgtaa |
236 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| || |||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
40068747 |
cttaaccatcaccggtcaccaatcaatatgaggagcaggaaataaggttatgaaataagagatagctgtgcttaccatcaaatcgcaaccttggccgtaa |
40068648 |
T |
|
| Q |
237 |
gagccacattttccgccatgagccgtcgtattttgattgaagtatcttatagttttcaaccactccagagagcttcataaaaaggctccgtagtcagaaa |
336 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |
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|
| T |
40068647 |
gagccacattttccgccatgagccatcgtattttgattgaagtattttatagttttcaaccgctccagagagcttcataaaaaggctccataatcagaaa |
40068548 |
T |
|
| Q |
337 |
ttagacttataagtagtagaagatccatattcaaaacctccaatgacattacctgccaacccttcaagcatgcattgcgccaaagtacagggttacgaat |
436 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || |
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|
| T |
40068547 |
ttagacttataagcagtaaaagatccatattctaaacctccaatgacattacctgccaacccttcaagcatgcattgcgccaaaatgcagggttacggat |
40068448 |
T |
|
| Q |
437 |
tgtataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcg |
496 |
Q |
| |
|
||| ||||||||||||| || || || || ||||||||||||||||||||||||||||| |
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|
| T |
40068447 |
tgtgtaccgccattttcgacatacgcacgatgcttttcccatatcatatggagtcattcg |
40068388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29200122 - 29200018
Alignment:
| Q |
1 |
ttaagatcgacagaaggattgaagcaaatcaatgtatcaggaccttgcccattctcatttcaagtttaacctttcataatcacacaatctagggaaatta |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29200122 |
ttaagatcgacagaagcattgaagaaaatcaatgtatcaggaccttgtc-attctcatttcaggtttaacctttcataatcacacaatctagggaaatta |
29200024 |
T |
|
| Q |
101 |
gtatgc |
106 |
Q |
| |
|
|||||| |
|
|
| T |
29200023 |
gtatgc |
29200018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 19768563 - 19768506
Alignment:
| Q |
49 |
ccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
19768563 |
ccattctcatttcaagtttaaccttccataatcaaacaatctagggaaaatagtatgc |
19768506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 243 - 495
Target Start/End: Complemental strand, 41099749 - 41099494
Alignment:
| Q |
243 |
cattttccgccatgagccgtcgtattttgattgaagtatcttatagttttcaaccactccagagagcttcataaaaaggctccgtagtcagaaat--tag |
340 |
Q |
| |
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||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| || | ||| || ||| |
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|
| T |
41099749 |
cattttctgccactagccatcatattttgattgaagtatcttatagttttcaaccactctagagtgcttcatgaaaaggctccataataagatattatag |
41099650 |
T |
|
| Q |
341 |
acttataagtagtagaagatccatattcaaaacctcc--aatgacattacctgccaacccttcaagcatgcattgcgccaaagtacagggttacgaattg |
438 |
Q |
| |
|
||||||||| |||| ||| || || |||||||| ||| | |||| | || ||||||||||||||||||||||| | | ||| |||||| ||| ||||| |
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|
| T |
41099649 |
acttataagcagtaaaagttctattttcaaaacgtccatattgacctcacttgccaacccttcaagcatgcattccacgaaaatacaggcttatgaattt |
41099550 |
T |
|
| Q |
439 |
tataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattc |
495 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||| || ||||||||||||||||| |
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|
| T |
41099549 |
tataccaccatttt-gacacacacaagaggctttttcctcatcatatggagtcattc |
41099494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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