View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9586_high_14 (Length: 238)
Name: NF9586_high_14
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9586_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6032121 - 6031893
Alignment:
| Q |
1 |
atgcacatccaaaaccatcctatggttaggccttaaacccccggtaaagacttgcatttgagttttctcacttaaatcatgggttggacacctctttaac |
100 |
Q |
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| T |
6032121 |
atgcacatccaaaaccatcctatggttaggccttaaaccctcggtaaagacttgcatttgagttttctcacttaaatcatgggttggacacctctttaac |
6032022 |
T |
|
| Q |
101 |
aataacttaaccctctctcaagcatcatagagagactcattctcctattgcctaaagttagcaatctcatgtcttttctcccaatatttggacatatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6032021 |
aataacttaaccctctctcaagcatcatagagagactcattctcctattgcctaaagttagcaatctcatgtcttttctcccaatatttggacatatgga |
6031922 |
T |
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| Q |
201 |
aaaatttaagttctagtttatcacaggtt |
229 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
6031921 |
aaaatttaagttctagtttatcccaggtt |
6031893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 20535531 - 20535611
Alignment:
| Q |
125 |
tcatagagagactcattctcctattgcctaaagttagcaatctcatgtcttttctcccaatatttggacatatggaaaaat |
205 |
Q |
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| T |
20535531 |
tcataaagtgactcgttctccccttgcctgaagtttgatatctcatgtttcttctcccaatatttggacacagggaaaaat |
20535611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 11251109 - 11251038
Alignment:
| Q |
134 |
gactcattctcctattgcctaaagttagcaatctcatgtcttttctcccaatatttggacatatggaaaaat |
205 |
Q |
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| T |
11251109 |
gactcattctccccttgcctaaagtttgagatctgatgtttcttcttccaatatttggacatagggaaaaat |
11251038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 16587790 - 16587708
Alignment:
| Q |
114 |
tctctcaagcatcatagagagactcattctcctattgcctaaagttagcaatctcatgtcttttctcccaatatttggacata |
196 |
Q |
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|||||||| ||||||| || |||||| ||||| |||||||||||| | ||||||||| | || ||||||||||| |||||| |
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| T |
16587790 |
tctctcaaacatcataaagtgactcactctccccttgcctaaagtttgagatctcatgtttcttttcccaatatttagacata |
16587708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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