View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9586_high_4 (Length: 323)
Name: NF9586_high_4
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9586_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 1020640 - 1020933
Alignment:
| Q |
21 |
gcaggtatgaccctgctctaaatcttctcttaattctaaggtctaaatatgaaataatcgtagaaattgagcattgacaacaattagataaagcatgaca |
120 |
Q |
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| T |
1020640 |
gcaggtatgaccctgctctaaatcttctcttaattctaaggtctaaatatgaaataatcgtagaaattgagcattgacaacaattagataaagcatgaca |
1020739 |
T |
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| Q |
121 |
cccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaatatactaatataaaccaagtttattgtatactcaccttagtttgattca |
220 |
Q |
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| T |
1020740 |
cccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaatatactaatataaaccaagtttattgtatactcgccttagtttgattca |
1020839 |
T |
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| Q |
221 |
atgcagtagcacttatattgtcaccttttatctaaatttccatgnnnnnnnnnttgtacacttaaaagaaaacaatgtattgacaaagtataat |
314 |
Q |
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| T |
1020840 |
atgcagtagcacttatattgtcaccttttatctaaatttccatgaaaaaaaaattgtacacttaaaaaaaaacaacgtattgacaaagtataat |
1020933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 150
Target Start/End: Original strand, 37709290 - 37709320
Alignment:
| Q |
120 |
acccttttgaatgtgtaaattacaaactata |
150 |
Q |
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| T |
37709290 |
acccttttgaatgtgtaaattacaaactata |
37709320 |
T |
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