View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9586_high_5 (Length: 306)
Name: NF9586_high_5
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9586_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 10424151 - 10424439
Alignment:
| Q |
1 |
ctcgaaccttctggaacttaaatagacggaaaactttttctaagaattttaacgatactggatgctgaattcaaacccaaaacattaattaaggtataag |
100 |
Q |
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| T |
10424151 |
ctcgaatcttatggaacttaaatagacggaaaatttttcctaaaaattttaacgatactggacgctgaattcgaatccaaaacattaattaagttataaa |
10424250 |
T |
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| Q |
101 |
agattcgtgtcaactcctctaaccgctcttcgatattttattatttatattgtttgctaaaaaatcaattcaaacccaacttgtacatgaaatcaccgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10424251 |
agattcgtgtcaactcctctaaccgctcttcgatattttattatttatattgtttgctaaaaaatcaattcaaacccaacttgtacatgaaatcaccgat |
10424350 |
T |
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| Q |
201 |
tatggtcttcattattacgtggtcaagcatggagtagtcatggtgtcccaaatatacagacctagattatgcagccctgccacaagagt |
289 |
Q |
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| T |
10424351 |
tatggtcttcattattacgtggtcaagcatggagtagtcatagtgtcccaaatatacagacctagattatgcagccctgccacaagagt |
10424439 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 8507133 - 8507201
Alignment:
| Q |
62 |
atgctgaattcaaacccaaaacattaattaaggtataagagattcgtgtcaactcctctaaccgctctt |
130 |
Q |
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||||||||||| |||||||||| ||||||||| || |||| || |||||| ||| ||||| ||||||| |
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| T |
8507133 |
atgctgaattcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaacgctctt |
8507201 |
T |
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