View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9586_low_22 (Length: 247)
Name: NF9586_low_22
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9586_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 39395983 - 39396202
Alignment:
| Q |
19 |
gtaatattgttcatattgttttactttgtgcatttgtttaatgtgtacataatttttgtttnnnnnnnntgtgtacatagtttcacagattatacgtaca |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
39395983 |
gtaatactgttcatattgttttactttgtgcatttgtttaatgtgtacataatttttgtttaaaaaaaatgtgtacataatttcacagattatacgtaca |
39396082 |
T |
|
| Q |
119 |
cctattttgagaccctatttcgtgtctgtttgtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaacta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396083 |
cctattttgagaccctatttcgtgtctgttggtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaacta |
39396182 |
T |
|
| Q |
219 |
aaacaatcatttagaccacc |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39396183 |
aaacaatcatttagaccacc |
39396202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University