View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9586_low_31 (Length: 237)

Name: NF9586_low_31
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9586_low_31
NF9586_low_31
[»] chr4 (8 HSPs)
chr4 (77-223)||(53978945-53979094)
chr4 (158-208)||(52450176-52450226)
chr4 (153-218)||(42747089-42747153)
chr4 (160-216)||(37182259-37182315)
chr4 (153-204)||(24393619-24393670)
chr4 (153-216)||(36138944-36139006)
chr4 (153-190)||(21027923-21027960)
chr4 (166-223)||(56210970-56211026)
[»] chr6 (6 HSPs)
chr6 (153-217)||(2725838-2725902)
chr6 (157-216)||(2744125-2744184)
chr6 (153-209)||(23252892-23252948)
chr6 (153-213)||(35187897-35187957)
chr6 (160-212)||(33699316-33699368)
chr6 (153-223)||(28992454-28992524)
[»] chr7 (3 HSPs)
chr7 (153-218)||(33818947-33819012)
chr7 (153-188)||(9902185-9902220)
chr7 (153-189)||(3756385-3756421)
[»] chr8 (9 HSPs)
chr8 (160-212)||(33102104-33102156)
chr8 (153-223)||(12750165-12750235)
chr8 (153-215)||(43846260-43846322)
chr8 (153-210)||(22842158-22842215)
chr8 (180-211)||(33102029-33102060)
chr8 (153-212)||(33581851-33581910)
chr8 (153-223)||(5995106-5995176)
chr8 (166-218)||(7913312-7913364)
chr8 (153-189)||(38006579-38006615)
[»] chr5 (2 HSPs)
chr5 (153-223)||(32303618-32303688)
chr5 (153-208)||(37442611-37442665)
[»] chr1 (5 HSPs)
chr1 (153-223)||(622930-623000)
chr1 (153-223)||(32827734-32827804)
chr1 (153-218)||(21322562-21322627)
chr1 (153-205)||(9873756-9873808)
chr1 (160-218)||(52186905-52186963)
[»] chr2 (2 HSPs)
chr2 (163-218)||(6620023-6620078)
chr2 (153-223)||(13387327-13387397)
[»] chr3 (2 HSPs)
chr3 (158-218)||(35310423-35310483)
chr3 (153-218)||(20991562-20991627)
[»] scaffold0004 (1 HSPs)
scaffold0004 (160-218)||(130735-130792)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 53978945 - 53979094
Alignment:
Q  77 caccccttaaacttattagatcctcaaataaagtactgtgaccactctaatatggtatattcatatttgagcagtgttctt---ccatctgtttttgctc 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||    
T  53978945 caccccttaaacttattagatcctcaaataaagtattgtgaccactctaatatggtacattcatatttgagcagtgttcttcccccatctgtttttgctc 53979044  T
Q  174 attcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    ||||| || |||||||  |||||| ||||||||||| |||||||| ||||    
T  53979045 attcctgttaaaatagtcgaacgtgagttaactcacacatgtgtattttc 53979094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 52450226 - 52450176
Alignment:
Q  158 ccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactca 208  Q
    |||||||||||| |||||||||||||||||||| || ||| ||||||||||    
T  52450226 ccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaactca 52450176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 42747089 - 42747153
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    |||||||||||||||||||| ||||||||||||||||  || |||  ||||||||||||| |||||    
T  42747089 ttcttccatctgtttttgctaattcccgtcaaaatagtagagcgt-cgttaactcacgcaggtgta 42747153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 37182315 - 37182259
Alignment:
Q  160 atctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtg 216  Q
    |||||||||||||| ||||| |||||||| | || ||||||||||||||| ||||||    
T  37182315 atctgtttttgctcgttcccatcaaaataaccgagcgtaagttaactcacacatgtg 37182259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 24393619 - 24393670
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaa 204  Q
    |||| |||||||||||||||||||||| ||||||||| ||| ||| ||||||    
T  24393619 ttctcccatctgtttttgctcattcccatcaaaatagttgagcgtgagttaa 24393670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 36138944 - 36139006
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtg 216  Q
    |||| |||||||||||| ||||||| ||||||||||   |||||| ||||||||||||||||||    
T  36138944 ttctcccatctgttttt-ctcattctcgtcaaaataagcgaacgtgagttaactcacgcatgtg 36139006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 21027960 - 21027923
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagc 190  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  21027960 ttctcccatctgtttttgctcattcctgtcaaaatagc 21027923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 56211026 - 56210970
Alignment:
Q  166 ttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||| | |||||| ||||    
T  56211026 ttttgctcatttccgtcaaaatagctg-acgtgagttaactcacacgtgtgtattttc 56210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 2725902 - 2725838
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgt 217  Q
    |||| ||||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||    
T  2725902 ttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgcaagtgt 2725838  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 2744125 - 2744184
Alignment:
Q  157 tccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtg 216  Q
    ||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  2744125 tccatctgtttttgctcgttcccgtcaaaataacagaacgtgagttaactcacgcatgtg 2744184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 23252948 - 23252892
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcac 209  Q
    |||| ||||||| ||||||||||||||||||||||||| || ||| |||||||||||    
T  23252948 ttctcccatctggttttgctcattcccgtcaaaatagccgagcgtgagttaactcac 23252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 35187897 - 35187957
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcat 213  Q
    |||||||||||| |||||||||||||||| |||||||  || ||| |||||||||||||||    
T  35187897 ttcttccatctgattttgctcattcccgttaaaatagtcgaccgtgagttaactcacgcat 35187957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 33699316 - 33699368
Alignment:
Q  160 atctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgca 212  Q
    |||||||||||||  ||||||||||||||| ||| ||| ||||||||||||||    
T  33699316 atctgtttttgcttgttcccgtcaaaataggtgagcgtgagttaactcacgca 33699368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 28992524 - 28992454
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    |||| ||||||| |||||||||||||||| |||||||  || ||| | ||||||||| |||||||| ||||    
T  28992524 ttctcccatctggttttgctcattcccgttaaaatagacgatcgtgatttaactcacacatgtgtattttc 28992454  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 33819012 - 33818947
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    ||||||||||||||||||||||| ||||||||| |||  |||||| |||||||||| |||||||||    
T  33819012 ttcttccatctgtttttgctcatccccgtcaaagtaggcgaacgtgagttaactcatgcatgtgta 33818947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 9902220 - 9902185
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaata 188  Q
    |||| |||||||||||||||||||||||||||||||    
T  9902220 ttctcccatctgtttttgctcattcccgtcaaaata 9902185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 3756385 - 3756421
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatag 189  Q
    |||| |||| |||||||||||||||||||||||||||    
T  3756385 ttctcccatttgtttttgctcattcccgtcaaaatag 3756421  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 33102156 - 33102104
Alignment:
Q  160 atctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgca 212  Q
    ||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  33102156 atctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgca 33102104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 12750165 - 12750235
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    |||| |||||||||||| ||||| |||||| ||||||| || ||| |||||||||||||| ||||| ||||    
T  12750165 ttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaactcacgcaggtgtattttc 12750235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 43846260 - 43846322
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgt 215  Q
    |||||||||||||||||| ||| |||||| |||||||  || ||| |||||||||||||||||    
T  43846260 ttcttccatctgtttttgttcactcccgttaaaatagtcgagcgtgagttaactcacgcatgt 43846322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 22842158 - 22842215
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacg 210  Q
    |||| |||||||||||| |||||||||||||||||||  || ||| ||||||||||||    
T  22842158 ttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcacg 22842215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 33102029 - 33102060
Alignment:
Q  180 gtcaaaatagctgaacgtaagttaactcacgc 211  Q
    ||||||||||||||||||||||||||||||||    
T  33102029 gtcaaaatagctgaacgtaagttaactcacgc 33102060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 33581910 - 33581851
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgca 212  Q
    |||||||||||| ||||||||||||||  |||||||||  | ||| ||||||||||||||    
T  33581910 ttcttccatctgattttgctcattcccaacaaaatagcctagcgtgagttaactcacgca 33581851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 5995106 - 5995176
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    |||| |||||| ||||||||| ||||||| |||||||   ||| | |||||||||||||||||||| ||||    
T  5995106 ttctcccatctatttttgctcgttcccgttaaaatagtacaacatgagttaactcacgcatgtgtattttc 5995176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 7913312 - 7913364
Alignment:
Q  166 ttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    ||||||||||| |||||||||||| ||| ||| ||||||| ||| ||||||||    
T  7913312 ttttgctcatttccgtcaaaatagttgagcgtgagttaacacacacatgtgta 7913364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 38006615 - 38006579
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatag 189  Q
    |||| |||||||||||||||||||||||| |||||||    
T  38006615 ttctcccatctgtttttgctcattcccgttaaaatag 38006579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 32303618 - 32303688
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    |||||||||||| |||||||||||  |||||||||||  || ||| |||||||||||||||||||| ||||    
T  32303618 ttcttccatctgattttgctcattttcgtcaaaatagtcgagcgtgagttaactcacgcatgtgtattttc 32303688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 37442665 - 37442611
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactca 208  Q
    |||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||    
T  37442665 ttcttccatctgtttttgctcattcccgtc-aaatagccgagcgtgagttaactca 37442611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 623000 - 622930
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    |||| ||||||||||||||| || ||||||||||||||||| | | ||||||||| |||||||||| ||||    
T  623000 ttctcccatctgtttttgcttatccccgtcaaaatagctgagcctgagttaactcgcgcatgtgtattttc 622930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 32827734 - 32827804
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    |||| ||||||||||||||||||||| ||||||||||| ||  ||| ||||||||| ||||||||| ||||    
T  32827734 ttctcccatctgtttttgctcattcctgtcaaaatagccgagtgtaggttaactcatgcatgtgtattttc 32827804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 21322627 - 21322562
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    |||| ||||||||||||||||| ||||||||||||||| ||  || |||||||||||||| |||||    
T  21322627 ttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaactcacgcaggtgta 21322562  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 9873808 - 9873756
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaac 205  Q
    |||| |||||||||||| || ||||||||||||||||| ||||||||||||||    
T  9873808 ttctcccatctgtttttacttattcccgtcaaaatagccgaacgtaagttaac 9873756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 52186963 - 52186905
Alignment:
Q  160 atctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    ||||||||||||||| | || |||||||||| || ||| |||||||||||||| |||||    
T  52186963 atctgtttttgctcacttccatcaaaatagccgagcgtgagttaactcacgcaggtgta 52186905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 6620023 - 6620078
Alignment:
Q  163 tgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||| ||| |||||    
T  6620023 tgtttttgctcattcccgtcaaaatagttgagcgtgagttaactcatgcaggtgta 6620078  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 13387327 - 13387397
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgtactttc 223  Q
    |||| ||||||||||||  ||||||||||||||||||   | ||| |||||||||||| ||||||| ||||    
T  13387327 ttctcccatctgtttttcttcattcccgtcaaaatagtcaagcgtgagttaactcacgtatgtgtattttc 13387397  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 35310483 - 35310423
Alignment:
Q  158 ccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    |||||| ||||||||||| |||||||||||||| || ||| ||||||||||| || |||||    
T  35310483 ccatctatttttgctcatccccgtcaaaatagccgagcgtgagttaactcacacaggtgta 35310423  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 20991562 - 20991627
Alignment:
Q  153 ttcttccatctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    |||| ||||||  ||||||||||||||||||||||||| || ||| ||||||| ||| || |||||    
T  20991562 ttctcccatctaattttgctcattcccgtcaaaatagccgagcgtgagttaacccacacaggtgta 20991627  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 130792 - 130735
Alignment:
Q  160 atctgtttttgctcattcccgtcaaaatagctgaacgtaagttaactcacgcatgtgta 218  Q
    ||||||||||| ||||||||||| ||||| | |||||| |||||||||||||| |||||    
T  130792 atctgtttttgttcattcccgtc-aaataaccgaacgtgagttaactcacgcaggtgta 130735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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