View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9586_low_33 (Length: 232)

Name: NF9586_low_33
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9586_low_33
NF9586_low_33
[»] chr6 (2 HSPs)
chr6 (11-214)||(4183683-4183886)
chr6 (12-214)||(4744523-4744725)
[»] chr1 (8 HSPs)
chr1 (34-190)||(51382140-51382296)
chr1 (27-214)||(51857778-51857965)
chr1 (32-148)||(51763628-51763744)
chr1 (27-190)||(51781992-51782155)
chr1 (39-170)||(51221896-51222027)
chr1 (27-190)||(51831605-51831768)
chr1 (27-154)||(51828985-51829113)
chr1 (60-140)||(25611721-25611801)
[»] scaffold0015 (1 HSPs)
scaffold0015 (93-181)||(41141-41229)
[»] chr3 (3 HSPs)
chr3 (69-140)||(955600-955668)
chr3 (95-139)||(1941330-1941374)
chr3 (99-136)||(803982-804019)
[»] chr7 (1 HSPs)
chr7 (61-154)||(1421900-1421993)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 4183683 - 4183886
Alignment:
Q  11 agcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183683 agcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccag 4183782  T
Q  111 gacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4183783 gacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttagtgg 4183882  T
Q  211 gagg 214  Q
    ||||    
T  4183883 gagg 4183886  T

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Target: chr6; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 4744523 - 4744725
Alignment:
Q  12 gcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4744523 gcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaatt-cagg 4744621  T
Q  112 acttgcaaacgcaacggagttgaagga-ggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgg 210  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4744622 acttgcaaacgcaacggagttgaaggagggtgtttcacagggagacagcagaggatttctgccacaagatcgaatggaagtaacggaggagagttagtgg 4744721  T
Q  211 gagg 214  Q
    ||||    
T  4744722 gagg 4744725  T

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Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 51382140 - 51382296
Alignment:
Q  34 ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttg 133  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||    
T  51382140 ggcggtcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttg 51382239  T
Q  134 aaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaag 190  Q
    ||||||||||||||| |||||   ||| |||||||||||||| |||||||| |||||    
T  51382240 aaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaag 51382296  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 51857965 - 51857778
Alignment:
Q  27 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 126  Q
    |||| |||||||||| |||||||||| ||||| |||||||| ||| | | ||||| ||||||||| ||||||||||||||||| |||||||| | |||||    
T  51857965 aggtggtggcggtcgaggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaac 51857866  T
Q  127 ggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgggagg 214  Q
    ||||||||||||| | |||||| |||||   ||| || ||||||| ||| |||||||| | ||| || ||| |||| ||||| |||||    
T  51857865 ggagttgaaggagatttttcacggggagctggcacagaatttctgtcacgagatcgaacgaaagaaatggaagagaattggtaggagg 51857778  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 51763628 - 51763744
Alignment:
Q  32 gtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagt 131  Q
    ||||||||| |||||||| || |  || |||||||| ||||||| |||||  ||||||||  |||||||||||||||| |||||||| ||||||| ||||    
T  51763628 gtggcggtcatggttggaagttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagt 51763727  T
Q  132 tgaaggaggtgtttcac 148  Q
    |||||||| ||||||||    
T  51763728 tgaaggagatgtttcac 51763744  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 51782155 - 51781992
Alignment:
Q  27 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 126  Q
    |||| |||||| |||||||| ||||| ||||| |||| ||| || || |||||||| |||||||||||||||||||||||||| ||||| || || |  |    
T  51782155 aggtggtggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacggc 51782056  T
Q  127 ggagttgaaggaggtgtttcacagggagacag-cataggatttctgccacaagatcgaatggaag 190  Q
    |||||| || ||| |||||||| ||||| ||| || ||||||||||| || |||||||| |||||    
T  51782055 ggagtttaatgagatgtttcacggggag-cagacacaggatttctgcaaccagatcgaacggaag 51781992  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 51221896 - 51222027
Alignment:
Q  39 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaagga 138  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||  ||||||| ||||||||||||||||| |||||||| | ||| |||||||||| ||    
T  51221896 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatga 51221995  T
Q  139 ggtgtttcacagggagacagcataggatttct 170  Q
    |||||||||| || || | ||| |||||||||    
T  51221996 ggtgtttcacgggcagccggcacaggatttct 51222027  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 51831768 - 51831605
Alignment:
Q  27 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 126  Q
    |||| |||||||| | |||||||||| |||||  ||||||| ||| ||| ||| |||||||| |  ||||||||||| ||||| |||||||| || ||||    
T  51831768 aggtggtggcggtggaggttggaggttgacaactgaaggtgcttcctggtgaaattggaatcttcagagataagagagttccatgacttgcagacacaac 51831669  T
Q  127 ggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaag 190  Q
    |||||||||||||   |||||| ||||| | ||| |||||| || |||| ||||| || |||||    
T  51831668 ggagttgaaggagaaatttcactgggagccggcacaggattactaccacgagatcaaacggaag 51831605  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 51829113 - 51828985
Alignment:
Q  27 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggactt-gcaaacgcaa 125  Q
    |||| |||||||| ||||| | |||| || ||  ||||||| ||| |||| || |||||||| |  | ||||||||||||||| ||||| ||| || |||    
T  51829113 aggtggtggcggttgtggtcgtaggttgagaagtgaaggtgtttcctggcaaaattggaatcctcagggataagagaattccatgactttgcagacacaa 51829014  T
Q  126 cggagttgaaggaggtgtttcacagggag 154  Q
    |||||||||| |||||||||||| |||||    
T  51829013 cggagttgaatgaggtgtttcacggggag 51828985  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 25611721 - 25611801
Alignment:
Q  60 cgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 140  Q
    |||||||| |||||| | || |||| |||||  || || ||||||||||| |||||||| ||||||| || ||||||||||    
T  25611721 cgaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggagg 25611801  T

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Target: scaffold0015 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 41141 - 41229
Alignment:
Q  93 gagataagagaattccaggacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatc 181  Q
    ||||| ||||||||||| |||||||| |||||||||| ||| ||||||  |||||||||||| |  ||||||||||| |||||||||||    
T  41141 gagattagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatc 41229  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 955668 - 955600
Alignment:
Q  69 ttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 140  Q
    ||||||||||| |||||||||   ||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  955668 ttcttggcgaagttggaatca---gagataagagaattccaagacttacaaacgcatcgaagttgaaggagg 955600  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 1941330 - 1941374
Alignment:
Q  95 gataagagaattccaggacttgcaaacgcaacggagttgaaggag 139  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||    
T  1941330 gataagagaattccacgacttgcaaacgcaccggaattgaaggag 1941374  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 803982 - 804019
Alignment:
Q  99 agagaattccaggacttgcaaacgcaacggagttgaag 136  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  803982 agagaattccatgacttgcaaacgcatcggagttgaag 804019  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 1421900 - 1421993
Alignment:
Q  61 gaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggaggtgtttcacagggag 154  Q
    ||||||| || ||||||||||||| |||||  ||||| ||| ||||||| ||||| || |||||||||| ||| ||||||  |||||| |||||    
T  1421900 gaaggtgttttttggcgaatttgggatcatttgagattagaaaattccacgacttacagacgcaacggaattgtaggaggaatttcactgggag 1421993  T

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