View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9586_low_35 (Length: 228)
Name: NF9586_low_35
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9586_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 6032098 - 6032292
Alignment:
| Q |
12 |
cataggatggttttggatgtgcatatggagttagtatgagagtgaaaactgaattacaagtccatgcccttattgaatatatggcctaaacgaataccgc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6032098 |
cataggatggttttggatgtgcatatggagttagtatgagagtgaaaactgaattacaagtccaagcccttattgaatatatggcctaaacgaataccgt |
6032197 |
T |
|
| Q |
112 |
gcttgttgaaggtgatcgtgaagaagaggaaagaaaataatgaataaagagaaaaaatattatgtggtgatagtgcgctattacatataatagac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6032198 |
gcttgttgaaggtgatcgtgaagaagaggaaagaaaatgatgaataaagagaaaaaatattatgtggtgatagtgcgctattacatataatagac |
6032292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University