View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9586_low_5 (Length: 449)
Name: NF9586_low_5
Description: NF9586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9586_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 2355046 - 2355478
Alignment:
| Q |
19 |
aacatagcatgaaaactttgacatcaatgcaattattatctggaaatatacaaaaggaatgcttatccacaaactacttatgaaagtt------------ |
106 |
Q |
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| T |
2355046 |
aacatagcatgaaaactttgacaccaatgcaattattatctggaaataaacaaatggaatgcttatgcacaaactacttatgaaagttatactttagcga |
2355145 |
T |
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| Q |
107 |
---taacatgtctatactctagaattcagagcttaatcaataatgaaaggaggcacgtaaaaataaaactaaattgaagagttgccttgcagtagagaga |
203 |
Q |
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| T |
2355146 |
gtttaacatgtctatactctagaattcagagcttaatcaataacgaaaggaggcatgtaaaaataaaactaaattgaagagttgccttgtagtagagaga |
2355245 |
T |
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| Q |
204 |
tttaccgcatttgcatcgtgattgtcaatgcctgggattgatgtaacaactttaaggtaaaagttcattccttgcaccaactgcttcctcttcaaaacca |
303 |
Q |
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| T |
2355246 |
tttaccgcatttgcatcgtgattgtcaatgcctgggattgatgtaacaactttaaggtaaaagttcattccttgcaccaactgcttcctcttcaaaacca |
2355345 |
T |
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| Q |
304 |
taacaaaatttaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctca |
403 |
Q |
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| T |
2355346 |
taacaaaattcaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctca |
2355445 |
T |
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| Q |
404 |
cctcagccttcagtttttcttcaattctctgct |
436 |
Q |
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| T |
2355446 |
cctcagctttcagtttttcttcaattctctgct |
2355478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 308 - 436
Target Start/End: Complemental strand, 2222689 - 2222561
Alignment:
| Q |
308 |
aaaatttaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctc |
407 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222689 |
aaaattcaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctc |
2222590 |
T |
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| Q |
408 |
agccttcagtttttcttcaattctctgct |
436 |
Q |
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| T |
2222589 |
agctttcagtttttcttcaattctctgct |
2222561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 38144723 - 38144781
Alignment:
| Q |
48 |
caattattatctggaaatatacaaaaggaatgcttatccacaaactacttatgaaagtt |
106 |
Q |
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| T |
38144723 |
caattattatctggaaatatacgaaaggaatgcttatgcacaaactacttatgaaagtt |
38144781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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