View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9587_high_1 (Length: 306)
Name: NF9587_high_1
Description: NF9587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9587_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 35798845 - 35798948
Alignment:
| Q |
26 |
ctattcatgtgatactcattagtgccatgatgatatccagggttcttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttcccc |
125 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||||| || |||||||||||||||| |
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| T |
35798845 |
ctattcatctgatactcattagtgccatgatgatatccagggttcttagaccaagacatgttgttttctttctttctgttatatccatcccatgttcccc |
35798944 |
T |
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| Q |
126 |
aatt |
129 |
Q |
| |
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|||| |
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| T |
35798945 |
aatt |
35798948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 35765889 - 35766005
Alignment:
| Q |
26 |
ctattcatgtgatactcattagtgccatgatgatatccagggttcttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttcccc |
125 |
Q |
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|||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||| |
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| T |
35765889 |
ctattcatctgatagtcactagtgccatgatgatatccagggttcttagaccatgacatgttg---tctctccttctgttatatccatcccatgttcccc |
35765985 |
T |
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| Q |
126 |
aattcccattccgaccattt |
145 |
Q |
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|||||||| ||| ||||||| |
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| T |
35765986 |
aattcccactcccaccattt |
35766005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 35755257 - 35755376
Alignment:
| Q |
26 |
ctattcatgtgatactcattagtgccatgatgatatccagggttcttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttcccc |
125 |
Q |
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|||||||| |||||||||||| |||||| ||||| | ||||| |||||||||||| |||||||||||||||||||||| | || |||||||||||||||| |
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| T |
35755257 |
ctattcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgttttctctccttctgctatatccatcccatgttcccc |
35755356 |
T |
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| Q |
126 |
aattcccattccgaccattt |
145 |
Q |
| |
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|||||||| ||| ||||||| |
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| T |
35755357 |
aattcccactcccaccattt |
35755376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 35789215 - 35789320
Alignment:
| Q |
24 |
cactattcatgtgatactcattagtgccatgatgatatccagggttcttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttcc |
123 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||| || |
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| T |
35789215 |
cactattcatctgatactcattagttccatgatcatatccagggttcgtagaccatgatatgttgttttctctccttctgttatatccatcccatgtccc |
35789314 |
T |
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| Q |
124 |
ccaatt |
129 |
Q |
| |
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|||||| |
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| T |
35789315 |
ccaatt |
35789320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 35785413 - 35785505
Alignment:
| Q |
53 |
tgatgatatccagggttcttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttccccaattcccattccgaccattt |
145 |
Q |
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|||||||| ||||||||| |||||| | ||| |||||||||||| ||||||| || |||||||||||| ||||||| | ||||| ||||||| |
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| T |
35785413 |
tgatgataaccagggttcatagaccgagacatcttgttttctctctttctgttatacccatcccatgttgcccaattactattccaaccattt |
35785505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 35760409 - 35760514
Alignment:
| Q |
26 |
ctattcatgtgatactcattagtgccatgatgatatccagggttcttagaccatggcatgttgttttctctccttctgttgtaaccatcccatgttcccc |
125 |
Q |
| |
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|||||||| ||||| |||||||| ||||||| || ||| ||||| |||||||| | |||||| ||||||| ||||||| || |||||||||| ||||| |
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| T |
35760409 |
ctattcatctgatattcattagtaccatgataatgtccggggttattagaccacgacatgtt---ttctctctttctgttatatccatcccatgctcccc |
35760505 |
T |
|
| Q |
126 |
aattcccat |
134 |
Q |
| |
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|||| |||| |
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| T |
35760506 |
aatttccat |
35760514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 35766115 - 35766188
Alignment:
| Q |
222 |
cagaagcgcaatgccgatcccaggagtgcgtttcattattttcaagtttgtccaattcccatccatgagaagca |
295 |
Q |
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||||||| |||| || |||||||||| ||||||| ||||||| ||| || |||||||||||| ||||||||| |
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| T |
35766115 |
cagaagcccaataacgttcccaggagtttgtttcatcattttcatgttggttcaattcccatccttgagaagca |
35766188 |
T |
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