View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9587_low_15 (Length: 243)
Name: NF9587_low_15
Description: NF9587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9587_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 15393916 - 15393819
Alignment:
| Q |
146 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaa |
243 |
Q |
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| T |
15393916 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaa |
15393819 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 15394048 - 15393980
Alignment:
| Q |
19 |
attcaataacttccaactactaatttctatctgatactcccttgtcctcagtgtaaccctaaccatcac |
87 |
Q |
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| T |
15394048 |
attcaataacttccaactactaatttctatctgatactcccttgtcctcagtgtaaccctaaccatcac |
15393980 |
T |
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